Detailed information NTG0601465

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: NC516_RS04505
• Genome accession: NZ_CP099485
• Coordinates: 883351..885879 (+)
• Length: 842 a.a.
• NCBI ID: WP_035147232.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain WiKim0095
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 878351..890879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NC516_RS04485 (NC516_04485)	-	878993..880291 (+)	1299	WP_035147224.1	pyrimidine-nucleoside phosphorylase	-
NC516_RS04490 (NC516_04490)	-	880528..881861 (+)	1334	Protein_849	FAD-dependent oxidoreductase	-
NC516_RS04495 (NC516_04495)	-	882015..882674 (+)	660	WP_011374509.1	histidine phosphatase family protein	-
NC516_RS04500 (NC516_04500)	-	882686..883345 (+)	660	WP_035147229.1	tetratricopeptide repeat protein	-
NC516_RS04505 (NC516_04505)	recD/recD2/recDB	883351..885879 (+)	2529	WP_035147232.1	ATP-dependent RecD-like DNA helicase	Machinery gene
NC516_RS04510 (NC516_04510)	-	885922..887133 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
NC516_RS04515 (NC516_04515)	-	887194..887433 (-)	240	WP_011374513.1	hypothetical protein	-
NC516_RS04520 (NC516_04520)	-	887698..888309 (+)	612	WP_056948489.1	LysE family transporter	-
NC516_RS04525 (NC516_04525)	-	888401..889513 (+)	1113	WP_061827294.1	DNA alkylation repair protein	-
NC516_RS04530 (NC516_04530)	-	889692..890408 (+)	717	WP_035147513.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93311.49 Da
• Isoelectric Point: 5.0804

>NTDB_id=601465 NC516_RS04505 WP_035147232.1 883351..885879(+) (recD/recD2/recDB) [Latilactobacillus sakei strain WiKim0095]
MAILETENTVDNKPTVTGAVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMALAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKPTPAKEVAPEQLALVGDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=601465 NC516_RS04505 WP_035147232.1 883351..885879(+) (recD/recD2/recDB) [Latilactobacillus sakei strain WiKim0095]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAGCGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAAGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCTGGCATCGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCACCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAATAATGGGATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTAGCAGAGCAATTAATGGCCTTAGCACACGATGGCAAAGTCGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGTCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTTCCAATT
TTATTGGCGGCACCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGGATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAGGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATTATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGCAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAACAGTCCGGAACTAAACGTCTTTAACGGTGAAATTGGGCAAATT
ACTGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGTTGAAACGAAACTTGTTGTATACAGCGGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCCTTTGATAAGGCGGCCAAGGAACTCTCCGCAAACCGGCAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACCAACGCCGGCTAAAGAAGTAGCGCCAGAACAATTGGCGTTAGTGGGCGATGCAGATGACAGT
GAAGAGACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418