Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   K6752_RS02475 Genome accession   NZ_CP082315
Coordinates   516166..517206 (+) Length   346 a.a.
NCBI ID   WP_054730276.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511166..522206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS02445 (K6752_02445) - 512277..512879 (-) 603 WP_238972191.1 XTP/dITP diphosphatase -
  K6752_RS02450 (K6752_02450) - 512998..513429 (-) 432 WP_005381010.1 DUF4426 domain-containing protein -
  K6752_RS02455 (K6752_02455) yggU 513558..513848 (-) 291 WP_005381011.1 DUF167 family protein YggU -
  K6752_RS02460 (K6752_02460) - 513848..514405 (-) 558 WP_005381012.1 YggT family protein -
  K6752_RS02465 (K6752_02465) proC 514458..515276 (-) 819 WP_005381013.1 pyrroline-5-carboxylate reductase -
  K6752_RS02470 (K6752_02470) - 515436..516137 (-) 702 WP_054730274.1 YggS family pyridoxal phosphate-dependent enzyme -
  K6752_RS02475 (K6752_02475) pilT 516166..517206 (+) 1041 WP_054730276.1 type IV pilus twitching motility protein PilT Machinery gene
  K6752_RS02480 (K6752_02480) pilU 517237..518343 (+) 1107 WP_005381016.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  K6752_RS02485 (K6752_02485) ruvX 518405..518830 (-) 426 WP_005381017.1 Holliday junction resolvase RuvX -
  K6752_RS02490 (K6752_02490) - 518866..519429 (-) 564 WP_005381020.1 YqgE/AlgH family protein -
  K6752_RS02495 (K6752_02495) gshB 519558..520508 (-) 951 WP_005381021.1 glutathione synthase -
  K6752_RS02500 (K6752_02500) rsmE 520522..521253 (-) 732 WP_025768830.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  K6752_RS02505 (K6752_02505) endA 521367..522062 (-) 696 WP_025768831.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38518.00 Da        Isoelectric Point: 6.5039

>NTDB_id=601320 K6752_RS02475 WP_054730276.1 516166..517206(+) (pilT) [Vibrio alginolyticus strain ZLV3]
MDITELLDFSVKHNASDLHLSAGVPPMVRIDGDVRKLGIPAFTHQEVHRLVFEIMNDAQRSEFEEKLEVDFSFELHNVGR
FRVNAFNQSRGCAAVFRTIPSSIPTLEELEAPEIFKKIANAEKGLVLVTGPTGSGKSTTLAAIVDYINRNHNKHVLTIED
PIEFVHNNNKCLINQREVHRDTHSFQNALRSALREDPDVILVGEMRDKETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRNGGGRIACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
RQLMAQGMVAREEVDSKIGVEVQQFS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=601320 K6752_RS02475 WP_054730276.1 516166..517206(+) (pilT) [Vibrio alginolyticus strain ZLV3]
ATGGATATCACTGAGTTACTGGATTTTAGTGTAAAACATAATGCCTCGGATCTACATCTTTCTGCAGGTGTCCCACCAAT
GGTTCGTATTGATGGGGATGTGAGAAAACTAGGTATTCCAGCGTTTACACACCAAGAAGTGCATCGTTTGGTTTTCGAAA
TCATGAACGATGCCCAACGCAGTGAGTTCGAAGAAAAACTCGAAGTCGATTTCTCTTTTGAGTTGCATAACGTTGGCCGT
TTCCGTGTCAACGCCTTCAACCAATCTCGCGGTTGTGCGGCAGTATTCCGTACCATTCCAAGTAGCATTCCAACTCTGGA
AGAGCTAGAAGCGCCAGAGATCTTCAAAAAAATTGCGAACGCTGAAAAAGGCTTAGTTCTGGTCACTGGCCCAACAGGTT
CAGGTAAATCGACGACCTTAGCAGCCATTGTTGACTACATTAACCGTAATCACAACAAGCACGTACTCACAATTGAAGAT
CCGATTGAATTTGTTCACAACAACAATAAATGTTTGATCAACCAGCGTGAAGTTCACCGTGACACCCATAGTTTCCAAAA
TGCTTTGCGTAGTGCATTGCGCGAAGACCCGGATGTGATTCTAGTCGGTGAGATGCGTGATAAAGAAACCATCAGCCTTG
CCTTAACGGCGGCAGAAACGGGTCACTTAGTTTTCGGGACGTTGCATACCAGCTCGGCGGCAAAAACTATTGACCGTATT
ATCGATGTTTTTCCTGGTAGTGATAAAGATATGGTCCGCTCGATGCTATCTGAGTCTCTTCGTTCGGTTATCGCGCAAAA
GCTTCTGAAGCGTAATGGTGGTGGCCGTATTGCATGCCATGAAATTATGATGGCAACGCCTGCGATTCGTAATTTGATCC
GCGAAGACAAAGTCGCGCAGATGTATTCGATCATTCAAACAGGTGCGGCTCACGGCATGCAAACCATGGAGCAAAATGCT
CGTCAGTTAATGGCGCAAGGCATGGTTGCTCGTGAAGAGGTCGATAGTAAGATCGGAGTAGAAGTGCAGCAATTCTCGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

86.667

99.711

0.864
  pilT Vibrio cholerae strain A1552

86.667

99.711

0.864
  pilT Acinetobacter baumannii D1279779

72.121

95.376

0.688
  pilT Acinetobacter baumannii strain A118

72.121

95.376

0.688
  pilT Acinetobacter nosocomialis M2

71.818

95.376

0.685
  pilT Acinetobacter baylyi ADP1

71.429

95.087

0.679
  pilT Pseudomonas aeruginosa PAK

69.139

97.399

0.673
  pilT Pseudomonas stutzeri DSM 10701

68.843

97.399

0.671
  pilT Legionella pneumophila strain Lp02

67.674

95.665

0.647
  pilT Legionella pneumophila strain ERS1305867

67.674

95.665

0.647
  pilT Neisseria meningitidis 8013

65.766

96.243

0.633
  pilT Neisseria gonorrhoeae MS11

65.465

96.243

0.63
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.83

91.908

0.486
  pilU Vibrio cholerae strain A1552

41.317

96.532

0.399
  pilU Pseudomonas stutzeri DSM 10701

40.719

96.532

0.393
  pilU Acinetobacter baylyi ADP1

39.062

92.486

0.361