NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	K4A87_RS04845	Genome accession	NZ_CP082178
Coordinates	1034198..1034608 (+)	Length	136 a.a.
NCBI ID	WP_208589542.1	Uniprot ID	-
Organism	Xanthomonas fragariae strain SHQP01
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1029198..1039608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K4A87_RS04830 (K4A87_04785)	coaE	1031057..1031689 (-)	633	WP_208589532.1	dephospho-CoA kinase	-
K4A87_RS04835 (K4A87_04790)	-	1031703..1032566 (-)	864	WP_208589534.1	A24 family peptidase	-
K4A87_RS04840 (K4A87_04795)	pilC	1032574..1033830 (-)	1257	WP_208591561.1	type II secretion system F family protein	Machinery gene
K4A87_RS04845 (K4A87_04800)	pilA	1034198..1034608 (+)	411	WP_208589542.1	pilin	Machinery gene
K4A87_RS04850 (K4A87_04805)	pilA/pilAI	1034683..1035090 (+)	408	WP_208589544.1	pilin	Machinery gene
K4A87_RS04855 (K4A87_04810)	pilB	1035207..1036943 (+)	1737	WP_208589545.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K4A87_RS04860 (K4A87_04815)	-	1036990..1037586 (-)	597	WP_208589553.1	Fic family protein	-
K4A87_RS04865 (K4A87_04820)	-	1037583..1037765 (-)	183	WP_208589555.1	YhfG family protein	-
K4A87_RS04870 (K4A87_04825)	pilR	1037840..1039288 (-)	1449	WP_208591562.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

Download Length: 136 a.a. Molecular weight: 14237.59 Da Isoelectric Point: 8.4936

                                >NTDB_id=599574 K4A87_RS04845 WP_208589542.1 1034198..1034608(+) (pilA) [Xanthomonas fragariae strain SHQP01]

MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAITGIGDLGLRSPTERCA

ITEITTLSATGTIVCTLKGNTQVKDKTVTLTRRTDGTWTCATTAAAKHAPAGCPGV

Nucleotide

Download Length: 411 bp

                                >NTDB_id=599574 K4A87_RS04845 WP_208589542.1 1034198..1034608(+) (pilA) [Xanthomonas fragariae strain SHQP01]

ATGAAGAAGCAGAACGGTTTTACGCTGATCGAACTGATGATCGTTATTGCGATCATCGCCATCCTGGCCGCCATCGCGCT

GCCGATGTACCAGGACTATGTGGCCAAGTCGCAGGTGACAGCTGGCCTGGCTGAAATCAATCCTGGCAAGACGCAGTACG

AAGTTGCCTTGAACGAAGGCAAGACTGCTATCACCGGTATTGGTGATTTGGGCCTGCGCTCGCCGACTGAACGCTGTGCC

ATCACCGAAATCACGACGCTGAGCGCGACAGGTACGATTGTTTGCACCTTGAAGGGTAATACTCAGGTGAAGGACAAAAC

TGTCACTCTGACGCGTCGTACGGATGGTACTTGGACCTGCGCGACCACTGCTGCCGCCAAGCATGCGCCGGCAGGCTGCC

CGGGCGTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-133)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Acinetobacter baumannii strain A118	51.825	100	0.522
pilA/pilAI	Pseudomonas stutzeri DSM 10701	51.852	99.265	0.515
pilA	Pseudomonas aeruginosa PAK	41.216	100	0.449
pilA2	Legionella pneumophila str. Paris	42.254	100	0.441
pilA2	Legionella pneumophila strain ERS1305867	42.254	100	0.441
pilA/pilAII	Pseudomonas stutzeri DSM 10701	44.361	97.794	0.434
pilA	Vibrio cholerae strain A1552	41.844	100	0.434
pilA	Vibrio cholerae C6706	41.844	100	0.434
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	41.844	100	0.434
comP	Acinetobacter baylyi ADP1	38.514	100	0.419
pilA/pilA1	Eikenella corrodens VA1	37.589	100	0.39
pilA	Haemophilus influenzae Rd KW20	35.915	100	0.375
pilE	Neisseria gonorrhoeae MS11	39.2	91.912	0.36

Detailed information NTG0599574