Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K4A87_RS04840 Genome accession   NZ_CP082178
Coordinates   1032574..1033830 (-) Length   418 a.a.
NCBI ID   WP_208591561.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain SHQP01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027574..1038830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A87_RS04830 (K4A87_04785) coaE 1031057..1031689 (-) 633 WP_208589532.1 dephospho-CoA kinase -
  K4A87_RS04835 (K4A87_04790) - 1031703..1032566 (-) 864 WP_208589534.1 A24 family peptidase -
  K4A87_RS04840 (K4A87_04795) pilC 1032574..1033830 (-) 1257 WP_208591561.1 type II secretion system F family protein Machinery gene
  K4A87_RS04845 (K4A87_04800) pilA 1034198..1034608 (+) 411 WP_208589542.1 pilin Machinery gene
  K4A87_RS04850 (K4A87_04805) pilA/pilAI 1034683..1035090 (+) 408 WP_208589544.1 pilin Machinery gene
  K4A87_RS04855 (K4A87_04810) pilB 1035207..1036943 (+) 1737 WP_208589545.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K4A87_RS04860 (K4A87_04815) - 1036990..1037586 (-) 597 WP_208589553.1 Fic family protein -
  K4A87_RS04865 (K4A87_04820) - 1037583..1037765 (-) 183 WP_208589555.1 YhfG family protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45508.83 Da        Isoelectric Point: 10.3013

>NTDB_id=599573 K4A87_RS04840 WP_208591561.1 1032574..1033830(-) (pilC) [Xanthomonas fragariae strain SHQP01]
MAAVRSAVKSKPTSQVEQMSTFVWEGTDKRGVKMKGEQTSKNQNLLRAELRRQGITPTVVKAKPKPLFGAAGKKITAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPAMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSWWWLI
LFVAIGAVVGFIFAYKRSPAMQHGMDRLILKVPIIGQVMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=599573 K4A87_RS04840 WP_208591561.1 1032574..1033830(-) (pilC) [Xanthomonas fragariae strain SHQP01]
ATGGCAGCAGTGCGTAGTGCAGTCAAGAGCAAGCCGACCTCACAGGTCGAACAGATGAGCACGTTTGTCTGGGAGGGAAC
CGACAAGCGTGGCGTGAAGATGAAGGGTGAACAGACTTCCAAGAACCAAAACTTGCTACGTGCGGAGCTACGACGCCAGG
GGATCACGCCGACAGTAGTGAAAGCGAAACCCAAGCCTTTATTTGGCGCTGCTGGAAAGAAGATTACAGCGAAGGATATT
TCATTCTTCAGCCGGCAAATGGCAACCATGATGAAATCGGGCGTGCCTATCGTCGGCGCACTTGAAATCATTGGCAGTGG
CCAGAAAAATCCGCGTATGCGGAATATGGTCGGCCAGATCCGCACTGACATCGAGGGAGGCTCGTCGCTACACGAGGCGG
TAAGCAAGCATCCCGTTCAGTTCGACGAGTTGTACAGGAATTTGGTCAAGGCAGGCGAAGGCGCCGGCGTCCTTGAAACA
GTGCTCGACACAATTGCAAGCTACAAAGAAAACATCGAAGCGTTGAAAGGCAAAATCAAGAAGGCGCTGTTCTACCCGGC
GATGGTAGTCGCTGTGGCGCTACTGGTCAGTGCGATCTTGTTGATCTTTGTCGTGCCGCAATTCGAAGATGTCTTCAAGG
GCTTCGGCGCGGAACTTCCGGCATTTACACAGATGATCGTCAACATGTCGCGTTTCATGGTGTCGTGGTGGTGGTTGATC
CTGTTCGTTGCCATCGGTGCCGTCGTGGGCTTCATCTTTGCCTACAAACGCTCACCTGCAATGCAGCACGGCATGGATCG
CCTGATCCTCAAAGTGCCGATCATTGGGCAGGTCATGCACAACAGCTCTATCGCGCGTTTTGCCCGCACCACGGCCGTGA
CATTTAAAGCAGGCGTACCTTTAGTTGAGGCACTCGGCATCGTGGCTGGCGCTACAGGCAACTCTGTCTATGAGAAAGCG
GTACTTCGCATGCGCGAAGACGTATCTGTGGGATATCCCGTCAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAGGCTGGTGCGTTAGACGCGATGCTGTTCAAGGTGGCAGAGTACTTCGAGC
AGGAAGTCAACAATGCGGTCGACGCACTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGT
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.518

95.215

0.51
  pilC Pseudomonas stutzeri DSM 10701

53.015

95.215

0.505
  pilC Acinetobacter baumannii D1279779

51.238

96.651

0.495
  pilC Acinetobacter baylyi ADP1

50.743

96.651

0.49
  pilG Neisseria gonorrhoeae MS11

44.389

95.933

0.426
  pilG Neisseria meningitidis 44/76-A

43.89

95.933

0.421
  pilC Vibrio cholerae strain A1552

40.741

96.89

0.395
  pilC Vibrio campbellii strain DS40M4

39.401

95.933

0.378
  pilC Thermus thermophilus HB27

37.717

96.411

0.364