Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K4A87_RS04870 Genome accession   NZ_CP082178
Coordinates   1037840..1039288 (-) Length   482 a.a.
NCBI ID   WP_208591562.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain SHQP01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032840..1044288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A87_RS04845 (K4A87_04800) pilA 1034198..1034608 (+) 411 WP_208589542.1 pilin Machinery gene
  K4A87_RS04850 (K4A87_04805) pilA/pilAI 1034683..1035090 (+) 408 WP_208589544.1 pilin Machinery gene
  K4A87_RS04855 (K4A87_04810) pilB 1035207..1036943 (+) 1737 WP_208589545.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K4A87_RS04860 (K4A87_04815) - 1036990..1037586 (-) 597 WP_208589553.1 Fic family protein -
  K4A87_RS04865 (K4A87_04820) - 1037583..1037765 (-) 183 WP_208589555.1 YhfG family protein -
  K4A87_RS04870 (K4A87_04825) pilR 1037840..1039288 (-) 1449 WP_208591562.1 sigma-54 dependent transcriptional regulator Regulator
  K4A87_RS04875 (K4A87_04830) - 1039517..1041130 (-) 1614 WP_208589557.1 HAMP domain-containing sensor histidine kinase -
  K4A87_RS04880 (K4A87_04835) sucC 1041363..1042532 (+) 1170 WP_208589559.1 ADP-forming succinate--CoA ligase subunit beta -
  K4A87_RS04885 (K4A87_04840) sucD 1042709..1043584 (+) 876 WP_208589561.1 succinate--CoA ligase subunit alpha -
  K4A87_RS04890 (K4A87_04845) - 1043824..1044132 (+) 309 Protein_916 DUF559 domain-containing protein -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 52333.16 Da        Isoelectric Point: 7.1091

>NTDB_id=599577 K4A87_RS04870 WP_208591562.1 1037840..1039288(-) (pilR) [Xanthomonas fragariae strain SHQP01]
MRPNPTDNCPLSSRWAIVRNMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPRPEQASRLL
GDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAH
ADTPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSEMLVDVRILSATHKDLGDLVSDGRFRHDLYYRI
NVIELRVPPLRERGGDLPQLAAAIIARLAHGHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEADQINASDL
RLPAHGGHRLAAPPGSAAVEPREAVVDIDPAASALPSYIEQLERAAIKKALEENRWNKTKTAAQLGITFRALRYKLKKLG
ME

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=599577 K4A87_RS04870 WP_208591562.1 1037840..1039288(-) (pilR) [Xanthomonas fragariae strain SHQP01]
TTGCGCCCGAACCCGACCGACAATTGTCCACTGTCGTCACGCTGGGCTATCGTGCGCAACATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACTCTCGGCCGCATGGGCTTGCGTATCAGCACCG
CCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGACCGACATGCGTCTGCCCGAC
GGCAACGGGATCGAACTGGTCACCGAGATCGCCAAGCGCTATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGATCTGGCAGTGGAAGCCCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACGGCCGGAACAGGCCAGCCGCCTGCTC
GGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCCCGCAGCCAGGCACCGGTCTACATCGTCGG
CGAATCGGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGAGCACGCGCGGCCGGGCCGTTCGTCCCGG
TCAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGGGCGCAT
GCCGACACGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACACTGTTTCTGGACGAAGTGGCCGAGTTGCCGCTGCAGAT
GCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCATCCAGCGAAATGCTGGTGGACGTGC
GCATCCTCTCGGCCACGCACAAGGATCTCGGCGACCTGGTTTCCGACGGCCGTTTTCGTCACGACCTGTACTACCGCATC
AACGTCATCGAACTGCGGGTTCCACCGCTGCGCGAACGCGGTGGCGACCTCCCGCAACTGGCCGCCGCCATCATCGCGCG
CCTGGCGCATGGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCACTCGATGCGCTCGACCACTACGGCTTCCCCG
GCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGCCGACCAGATCAATGCCAGCGACCTG
CGCCTGCCCGCCCACGGCGGCCATCGTCTCGCCGCCCCCCCTGGCAGCGCCGCTGTCGAACCGCGCGAAGCCGTCGTCGA
CATCGACCCCGCCGCCTCTGCGCTACCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCAAGAAAGCCCTGGAAGAAA
ATCGCTGGAACAAGACCAAGACCGCCGCGCAACTGGGCATTACGTTCCGCGCGCTGCGCTACAAGCTCAAGAAGTTGGGG
ATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(160-325)

Bacterial regulatory protein, Fis family (HTH_8)

(439-479)

Response regulator receiver domain (Response_reg)

(28-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.341

95.643

0.606
  pilR Acinetobacter baumannii strain A118

48.807

95.643

0.467