Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JMJ83_RS04445 Genome accession   NZ_CP079838
Coordinates   912608..913588 (+) Length   326 a.a.
NCBI ID   WP_079974074.1    Uniprot ID   -
Organism   Salmonella enterica subsp. salamae strain LHICA_SA3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 907608..918588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ83_RS04415 (JMJ83_04415) - 908184..909191 (+) 1008 WP_079814914.1 DUF1202 family protein -
  JMJ83_RS04420 (JMJ83_04420) hemW 909283..910419 (-) 1137 WP_023176917.1 radical SAM family heme chaperone HemW -
  JMJ83_RS04425 (JMJ83_04425) - 910412..911005 (-) 594 WP_001174766.1 XTP/dITP diphosphatase -
  JMJ83_RS04430 (JMJ83_04430) yggU 911013..911303 (-) 291 WP_001277206.1 DUF167 family protein YggU -
  JMJ83_RS04435 (JMJ83_04435) - 911300..911866 (-) 567 WP_001094848.1 YggT family protein -
  JMJ83_RS04440 (JMJ83_04440) - 911885..912590 (-) 706 Protein_877 YggS family pyridoxal phosphate-dependent enzyme -
  JMJ83_RS04445 (JMJ83_04445) pilT 912608..913588 (+) 981 WP_079974074.1 type IV pilus twitching motility protein PilT Machinery gene
  JMJ83_RS04450 (JMJ83_04450) - 913720..914409 (+) 690 WP_000098331.1 IclR family transcriptional regulator -
  JMJ83_RS04455 (JMJ83_04455) ruvX 914457..914873 (-) 417 WP_000099434.1 Holliday junction resolvase RuvX -
  JMJ83_RS04460 (JMJ83_04460) - 914873..915436 (-) 564 WP_001053170.1 YqgE/AlgH family protein -
  JMJ83_RS04465 (JMJ83_04465) gshB 915649..916596 (-) 948 WP_000593294.1 glutathione synthase -
  JMJ83_RS04470 (JMJ83_04470) rsmE 916616..917347 (-) 732 WP_001222491.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JMJ83_RS04475 (JMJ83_04475) endA 917423..918130 (-) 708 WP_079974072.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36088.26 Da        Isoelectric Point: 7.2608

>NTDB_id=589837 JMJ83_RS04445 WP_079974074.1 912608..913588(+) (pilT) [Salmonella enterica subsp. salamae strain LHICA_SA3]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRRQGRMEIAPFIAPDVDRLLLDWLNDVQQYQWRTHGQLDFAVSLDGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQAPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYASKRCLIQQREIGQHCATFAAGLRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERVVDS
FPAQEKEPVRSQLAGNLRAVLSQKLEADRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQSR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=589837 JMJ83_RS04445 WP_079974074.1 912608..913588(+) (pilT) [Salmonella enterica subsp. salamae strain LHICA_SA3]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAGACAAGGACGGATGGAGATCGCGCCTTTTATCGCGCCTGATGTCGACAGGCTTCTACTTGATTGGCTTAATG
ACGTGCAACAATATCAGTGGCGAACGCATGGCCAGCTTGATTTCGCCGTTTCACTGGACGGTACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACATCGTTGGCGCTACGGCTCTTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GGCGCCACCGATAGTACCAGCACTACTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCCACTGGCTGCGGGAAAT
CCACTACGCTGGCAGCGATGGTGGGATATCTTAATCAACATGCCGATAAACATATTCTGACGCTGGAAGATCCTATTGAG
TACCGTTACGCCAGCAAGCGTTGCCTGATACAGCAACGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
TTCGGCATTGCGTGAAGATCCCGATGTCATTTTGCTGGGAGAGCTGCGTGACAGCGAAACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGAGTAGTGGATAGT
TTCCCGGCGCAGGAAAAAGAACCGGTACGCAGTCAACTGGCGGGCAACCTGCGCGCCGTACTATCACAAAAACTGGAAGC
CGACAGGCAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGCGAAGGTA
AACTCCATCAGTTGGCCCATGTGATACAAACCGGGCAGCAGCAAGGGATGATGACATTCGCCCAGAGCGCGCAATCTCGT
CAGGCGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(55-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Neisseria meningitidis 8013

48.171

100

0.485
  pilT Neisseria gonorrhoeae MS11

47.866

100

0.482
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Acinetobacter baumannii strain A118

45.566

100

0.457
  pilT Acinetobacter baumannii D1279779

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.26

100

0.454
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Pseudomonas stutzeri DSM 10701

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

44.969

97.546

0.439
  pilT Legionella pneumophila strain ERS1305867

44.969

97.546

0.439
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.185

97.853

0.383
  pilU Pseudomonas stutzeri DSM 10701

36.446

100

0.371
  pilU Acinetobacter baylyi ADP1

36.923

99.693

0.368