Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   LPB404_RS00875 Genome accession   NZ_CP079821
Coordinates   194168..194650 (+) Length   160 a.a.
NCBI ID   WP_219074824.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 189168..199650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS00855 (LPB404_00855) tilS 190003..191277 (+) 1275 WP_219074821.1 tRNA lysidine(34) synthetase TilS -
  LPB404_RS00860 (LPB404_00860) hpt 191283..191825 (+) 543 WP_219074822.1 hypoxanthine phosphoribosyltransferase -
  LPB404_RS00865 (LPB404_00865) ftsH 191836..193806 (+) 1971 WP_219074823.1 ATP-dependent zinc metalloprotease FtsH -
  LPB404_RS00875 (LPB404_00875) comX/sigX 194168..194650 (+) 483 WP_219074824.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19863.86 Da        Isoelectric Point: 9.7603

>NTDB_id=589724 LPB404_RS00875 WP_219074824.1 194168..194650(+) (comX/sigX) [Streptococcus rubneri strain LPB0404]
MNFKKSYEKVKWIVWKCEKEFYIHLWDHADWEQEGRLVLYELQISNPEVEENEEILLTYFKTKFRNHIKDKVRKQESDKR
KLNKVPYTEIGEISHRLRSKELFLDELVLLRGALKEFRKNLTNQEKEDYDKLLMNQRFSGRAKMRRRLQEYLKDFKDHHL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=589724 LPB404_RS00875 WP_219074824.1 194168..194650(+) (comX/sigX) [Streptococcus rubneri strain LPB0404]
ATGAACTTTAAAAAATCATATGAAAAAGTAAAATGGATAGTATGGAAGTGTGAAAAGGAATTTTATATTCATCTTTGGGA
TCATGCAGATTGGGAACAAGAAGGTAGACTGGTACTATATGAACTACAAATAAGTAATCCTGAAGTAGAAGAAAATGAAG
AAATCCTATTAACCTATTTCAAAACAAAGTTTCGCAATCACATAAAGGATAAAGTTAGAAAACAAGAGAGTGATAAAAGG
AAGTTAAATAAGGTACCCTATACAGAAATCGGAGAGATTAGCCATCGACTTCGTTCAAAAGAACTCTTTTTGGATGAACT
AGTCCTATTAAGAGGAGCCTTAAAGGAATTTCGAAAAAATCTAACCAATCAAGAAAAAGAAGATTACGACAAATTACTGA
TGAATCAACGTTTCTCAGGAAGAGCAAAGATGCGTAGAAGGCTCCAAGAATATTTGAAGGATTTCAAGGATCATCATTTA
TGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis isolate S10

51.923

97.5

0.506
  comX/sigX Streptococcus suis P1/7

51.923

97.5

0.506
  comX/sigX Streptococcus suis D9

51.923

97.5

0.506
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

51.613

96.875

0.5
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

51.613

96.875

0.5
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

44.444

95.625

0.425
  comX/comX2 Streptococcus pneumoniae TIGR4

43.791

95.625

0.419
  comX/comX1 Streptococcus pneumoniae TIGR4

43.791

95.625

0.419
  comX/comX2 Streptococcus pneumoniae R6

43.137

95.625

0.412
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.137

95.625

0.412
  comX/comX2 Streptococcus pneumoniae Rx1

43.137

95.625

0.412
  comX/comX1 Streptococcus pneumoniae Rx1

43.137

95.625

0.412
  comX/comX2 Streptococcus pneumoniae D39

43.137

95.625

0.412
  comX/comX1 Streptococcus pneumoniae D39

43.137

95.625

0.412
  comX/comX1 Streptococcus pneumoniae R6

43.137

95.625

0.412
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.137

95.625

0.412
  comX/sigX Streptococcus mutans UA159

41.667

97.5

0.406
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

42.484

95.625

0.406
  comX Streptococcus thermophilus LMG 18311

41.83

95.625

0.4
  comX Streptococcus thermophilus LMD-9

41.83

95.625

0.4
  comX Streptococcus salivarius SK126

40.127

98.125

0.394
  comX/sigX Streptococcus salivarius strain HSISS4

40.127

98.125

0.394
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40

96.875

0.388
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

96.875

0.388
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40

96.875

0.388
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

96.875

0.388
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.789

95

0.387
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.789

95

0.387