Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LPB402_RS06520 Genome accession   NZ_CP079820
Coordinates   1385713..1386759 (-) Length   348 a.a.
NCBI ID   WP_004519239.1    Uniprot ID   A0A9X9N302
Organism   Neisseria sicca ATCC 29256     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380713..1391759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS06505 (LPB402_06510) - 1380749..1381927 (+) 1179 WP_004519232.1 phosphoglycerate kinase -
  LPB402_RS06510 (LPB402_06515) yccS 1382095..1384230 (-) 2136 WP_070504069.1 YccS family putative transporter -
  LPB402_RS06515 (LPB402_06520) - 1384397..1385626 (-) 1230 WP_219089168.1 PilT/PilU family type 4a pilus ATPase -
  LPB402_RS06520 (LPB402_06525) pilT 1385713..1386759 (-) 1047 WP_004519239.1 type IV pilus twitching motility protein PilT Machinery gene
  LPB402_RS06525 (LPB402_06530) - 1386877..1387590 (+) 714 WP_070461558.1 YggS family pyridoxal phosphate-dependent enzyme -
  LPB402_RS06530 (LPB402_06535) - 1387587..1387982 (+) 396 WP_070461559.1 RNA-binding protein -
  LPB402_RS06535 (LPB402_06540) proC 1388073..1388870 (+) 798 WP_070461560.1 pyrroline-5-carboxylate reductase -
  LPB402_RS06540 (LPB402_06545) - 1388873..1389430 (+) 558 WP_070461561.1 YggT family protein -
  LPB402_RS06545 (LPB402_06550) dksA 1389664..1390080 (+) 417 WP_049344904.1 RNA polymerase-binding protein DksA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38446.04 Da        Isoelectric Point: 7.1311

>NTDB_id=589697 LPB402_RS06520 WP_004519239.1 1385713..1386759(-) (pilT) [Neisseria sicca ATCC 29256]
MQITDLLAFGVKNKASDLHLSSGISPMIRVHGDIRRINLPEMSSEEVGTMITSVMNDHQRKLYQQDFEVDFSFELPNVAR
FRVNAFMTERGPAAVFRTIPSTVLTLEELRAPRIFQKIAENPRGLVLVTGPTGSGKSTTLAAMVNYINETQPAHILTIED
PIEFVHQSKKALINQRELHQHTHSFTNALRSALREDPDVILIGEMRDPETISLALTAAETGHLVFGTLHTTGAAKTIDRI
VDVFPAGEKEIVRSMLSESLRAIISQTLLKTRDGNGRVAAHEILISTPAVRNLIRENKIAQINAALQTGQAHGMQTLDQA
LQTLVRQGTISPELARSKAQNIENLSVF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=589697 LPB402_RS06520 WP_004519239.1 1385713..1386759(-) (pilT) [Neisseria sicca ATCC 29256]
ATGCAGATTACCGACTTACTCGCGTTCGGCGTGAAAAACAAAGCCTCCGACCTCCATTTGAGTTCGGGCATTTCCCCTAT
GATACGCGTACACGGCGACATCCGCCGCATCAACCTGCCCGAGATGAGCTCGGAAGAAGTCGGTACCATGATTACCTCGG
TCATGAACGACCACCAGCGCAAGCTCTATCAACAGGATTTTGAAGTCGATTTCTCATTTGAGCTGCCTAATGTTGCCCGT
TTCCGCGTCAACGCCTTTATGACCGAACGCGGCCCGGCCGCCGTATTCCGTACCATTCCGAGCACCGTTCTGACGCTGGA
AGAATTGCGTGCGCCGCGCATTTTCCAAAAAATTGCCGAAAATCCGCGCGGTTTGGTCTTGGTAACCGGCCCGACCGGTT
CGGGTAAATCCACCACGCTGGCGGCGATGGTCAACTACATCAACGAAACCCAACCGGCCCACATTCTGACCATCGAAGAC
CCGATTGAGTTCGTCCACCAAAGCAAAAAGGCGCTCATCAACCAGCGCGAGCTGCATCAGCACACCCACAGCTTTACCAA
CGCCCTGCGTTCCGCACTGCGCGAAGACCCCGACGTGATTTTGATCGGTGAGATGCGCGACCCTGAAACCATCTCCCTCG
CCCTGACCGCCGCCGAAACCGGCCACTTGGTTTTCGGCACGCTGCACACGACCGGCGCCGCCAAAACCATCGACCGTATT
GTCGACGTATTCCCCGCAGGCGAAAAAGAAATCGTGCGCTCCATGTTGTCCGAATCCTTGCGCGCCATCATTTCCCAAAC
CCTGCTGAAAACCCGCGACGGCAACGGCCGCGTCGCCGCACACGAAATCCTGATTTCCACACCGGCCGTGCGAAACCTCA
TCCGCGAGAACAAAATCGCCCAAATCAACGCCGCCCTCCAAACCGGTCAGGCCCACGGTATGCAAACCCTCGATCAAGCC
CTGCAAACCCTTGTCCGCCAAGGCACCATCAGCCCCGAGCTGGCACGCAGTAAGGCGCAAAACATCGAAAACCTCTCTGT
TTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Neisseria meningitidis 8013

86.705

99.425

0.862
  pilT Neisseria gonorrhoeae MS11

86.705

99.425

0.862
  pilT Acinetobacter nosocomialis M2

68.696

99.138

0.681
  pilT Acinetobacter baumannii D1279779

68.696

99.138

0.681
  pilT Acinetobacter baumannii strain A118

68.696

99.138

0.681
  pilT Pseudomonas stutzeri DSM 10701

68.116

99.138

0.675
  pilT Pseudomonas aeruginosa PAK

67.826

99.138

0.672
  pilT Acinetobacter baylyi ADP1

67.536

99.138

0.67
  pilT Legionella pneumophila strain Lp02

65.396

97.989

0.641
  pilT Legionella pneumophila strain ERS1305867

65.396

97.989

0.641
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

65

97.701

0.635
  pilT Vibrio cholerae strain A1552

65

97.701

0.635
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.662

95.115

0.491
  pilU Pseudomonas stutzeri DSM 10701

41.092

100

0.411
  pilU Vibrio cholerae strain A1552

39.655

100

0.397
  pilU Acinetobacter baylyi ADP1

39.08

100

0.391