Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   KGD87_RS18175 Genome accession   NZ_CP077414
Coordinates   4606099..4607214 (-) Length   371 a.a.
NCBI ID   WP_163784639.1    Uniprot ID   -
Organism   Myxococcus sp. SDU36     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4601099..4612214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD87_RS18160 (KGD87_18090) - 4601761..4603197 (-) 1437 WP_284661443.1 sigma-54 dependent transcriptional regulator -
  KGD87_RS18165 (KGD87_18095) - 4603194..4604777 (-) 1584 WP_284661444.1 ATP-binding protein -
  KGD87_RS18170 (KGD87_18100) - 4604788..4606041 (-) 1254 WP_284661446.1 type II secretion system F family protein -
  KGD87_RS18175 (KGD87_18105) pilT 4606099..4607214 (-) 1116 WP_163784639.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  KGD87_RS18180 (KGD87_18110) pilB 4607257..4608957 (-) 1701 WP_163786700.1 type IV-A pilus assembly ATPase PilB -
  KGD87_RS18185 (KGD87_18115) - 4609162..4610088 (-) 927 WP_284661447.1 bifunctional riboflavin kinase/FAD synthetase -
  KGD87_RS18190 (KGD87_18120) - 4610164..4610784 (+) 621 WP_284661448.1 tRNA (guanine-N7)-methyltransferase -
  KGD87_RS18195 (KGD87_18125) - 4610892..4611935 (+) 1044 WP_284661449.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40643.97 Da        Isoelectric Point: 8.2933

>NTDB_id=581413 KGD87_RS18175 WP_163784639.1 4606099..4607214(-) (pilT) [Myxococcus sp. SDU36]
MANLHQLLKAMVEKGASDLHITTGSPPQLRVDGELVPLKTAPLTPVETKQLCYSILTDAQKHKFEEDNELDLSFGVKGLS
RFRANIFMQRGAVAAAFRTIPFKILTFQELGLPPVVAELVKKSRGLILVTGPTGSGKSTTLASMIDKINTERHEHIMTIE
DPIEYLHPHKNCLVNQREVGADTRNFKTALKYILRQDPDVVLVGELRDLETIEAALTIAETGHICYATLHTNSAVQTINR
VLDVFPPYQQPQVRAQMSFVLEGVMSQALVSKAGGPGRILALEVMVPNPAIRNLIREDKVHQIYSSMQVGQAKFGMQTFN
QALAALLLRRLITQDEAFGRSTDPDELRNILATGGGTLPGMQRPGGGAGGR

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=581413 KGD87_RS18175 WP_163784639.1 4606099..4607214(-) (pilT) [Myxococcus sp. SDU36]
GTGGCCAACCTGCACCAGCTCCTCAAGGCGATGGTCGAGAAGGGCGCTTCCGACCTCCACATCACCACCGGCTCGCCGCC
GCAGCTCCGCGTCGACGGCGAGCTCGTCCCCTTGAAGACGGCGCCGCTGACTCCGGTGGAGACGAAGCAGCTCTGCTACT
CCATCCTCACGGACGCCCAGAAGCACAAGTTCGAAGAGGACAACGAGCTGGACCTGTCCTTCGGCGTGAAGGGCCTGTCG
CGCTTCCGCGCCAACATCTTCATGCAGCGTGGCGCGGTCGCCGCGGCGTTCCGGACCATTCCCTTCAAGATTCTGACGTT
CCAGGAGCTGGGGCTGCCGCCGGTGGTGGCGGAGCTGGTGAAGAAGTCGCGCGGGCTCATCCTGGTGACGGGCCCCACGG
GCTCGGGCAAGTCCACCACGCTGGCCTCGATGATCGACAAGATCAACACCGAGCGTCATGAGCACATCATGACCATCGAG
GACCCCATCGAGTACCTGCACCCGCACAAGAACTGCCTCGTGAATCAGCGAGAGGTGGGGGCGGACACGCGGAACTTCAA
GACGGCCCTCAAGTACATCCTCCGCCAGGACCCGGACGTGGTGCTCGTCGGTGAGCTCCGCGACCTGGAGACGATTGAGG
CGGCGCTCACCATCGCGGAGACAGGTCACATCTGCTACGCGACGCTACACACCAATAGCGCGGTGCAGACCATCAACCGC
GTGCTGGACGTGTTCCCGCCGTACCAGCAGCCGCAGGTCCGCGCGCAGATGTCCTTCGTGCTGGAGGGGGTCATGAGCCA
GGCGCTGGTGTCGAAGGCGGGCGGCCCTGGCCGCATCCTGGCGCTGGAGGTGATGGTGCCCAACCCCGCGATCCGGAACC
TCATCCGCGAGGACAAGGTCCACCAGATCTATTCGTCCATGCAGGTCGGTCAGGCGAAGTTCGGCATGCAGACCTTCAAC
CAGGCCCTGGCGGCGCTGCTGCTGCGGCGGCTCATCACCCAGGACGAGGCCTTCGGGCGTTCTACGGACCCTGATGAACT
GCGCAACATCCTGGCCACGGGCGGTGGGACGCTGCCCGGGATGCAGCGGCCAGGCGGGGGAGCGGGTGGTCGTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Legionella pneumophila strain ERS1305867

53.433

90.296

0.482
  pilT Legionella pneumophila strain Lp02

53.433

90.296

0.482
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.304

92.992

0.477
  pilT Pseudomonas stutzeri DSM 10701

50.725

92.992

0.472
  pilT Pseudomonas aeruginosa PAK

50.725

92.992

0.472
  pilT Acinetobacter baylyi ADP1

50.145

92.992

0.466
  pilT Acinetobacter baumannii D1279779

50.145

92.992

0.466
  pilT Acinetobacter baumannii strain A118

50.145

92.992

0.466
  pilT Acinetobacter nosocomialis M2

50.145

92.992

0.466
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.503

90.027

0.437
  pilT Vibrio cholerae strain A1552

48.503

90.027

0.437
  pilU Vibrio cholerae strain A1552

43.059

95.148

0.41
  pilT Neisseria meningitidis 8013

44.282

91.914

0.407
  pilT Neisseria gonorrhoeae MS11

44.282

91.914

0.407
  pilU Pseudomonas stutzeri DSM 10701

41.243

95.418

0.394
  pilU Acinetobacter baylyi ADP1

40.058

93.531

0.375