Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | KRO88_RS04695 | Genome accession | NZ_CP076739 |
| Coordinates | 984372..985409 (-) | Length | 345 a.a. |
| NCBI ID | WP_000355489.1 | Uniprot ID | A0A009PTR1 |
| Organism | Acinetobacter baumannii strain X4-584 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 941951..1008851 | 984372..985409 | within | 0 |
Gene organization within MGE regions
Location: 941951..1008851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KRO88_RS04485 (KRO88_04455) | - | 942586..944211 (-) | 1626 | WP_000834616.1 | NAD+ synthase | - |
| KRO88_RS04490 (KRO88_04460) | - | 944596..945156 (-) | 561 | WP_001048150.1 | hypothetical protein | - |
| KRO88_RS04495 (KRO88_04465) | - | 945247..946107 (-) | 861 | WP_000838098.1 | pirin family protein | - |
| KRO88_RS04500 (KRO88_04470) | hemJ | 946278..946730 (-) | 453 | WP_000339889.1 | protoporphyrinogen oxidase HemJ | - |
| KRO88_RS04505 (KRO88_04475) | - | 946749..947978 (-) | 1230 | WP_000832710.1 | beta-ketoacyl-ACP synthase II | - |
| KRO88_RS04510 (KRO88_04480) | - | 948275..949600 (+) | 1326 | WP_000160011.1 | EcsC family protein | - |
| KRO88_RS04515 (KRO88_04485) | rpsL | 949801..950175 (+) | 375 | WP_000246374.1 | 30S ribosomal protein S12 | - |
| KRO88_RS04520 (KRO88_04490) | rpsG | 950335..950805 (+) | 471 | WP_001138055.1 | 30S ribosomal protein S7 | - |
| KRO88_RS04525 (KRO88_04495) | fusA | 950984..953122 (+) | 2139 | WP_000113824.1 | elongation factor G | - |
| KRO88_RS04530 (KRO88_04500) | tuf | 953217..954407 (+) | 1191 | WP_001029610.1 | elongation factor Tu | - |
| KRO88_RS04535 (KRO88_04505) | - | 954611..955492 (+) | 882 | WP_000992305.1 | metal-dependent hydrolase | - |
| KRO88_RS04540 (KRO88_04510) | - | 955729..956604 (+) | 876 | WP_000992291.1 | metal-dependent hydrolase | - |
| KRO88_RS04545 (KRO88_04515) | rimI | 956713..957168 (+) | 456 | WP_000621543.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| KRO88_RS04550 (KRO88_04520) | - | 957213..958028 (-) | 816 | WP_000844343.1 | arginyltransferase | - |
| KRO88_RS04555 (KRO88_04525) | aat | 958047..958778 (-) | 732 | WP_000854785.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| KRO88_RS04560 (KRO88_04530) | trxB | 958898..959845 (-) | 948 | WP_001276144.1 | thioredoxin-disulfide reductase | - |
| KRO88_RS04565 (KRO88_04535) | - | 960115..963147 (+) | 3033 | WP_000127823.1 | DNA translocase FtsK | - |
| KRO88_RS04570 (KRO88_04540) | rhtC | 963297..963917 (+) | 621 | WP_000959259.1 | threonine export protein RhtC | - |
| KRO88_RS04575 (KRO88_04545) | - | 963973..964395 (-) | 423 | Protein_872 | hypothetical protein | - |
| KRO88_RS04580 (KRO88_04550) | - | 964429..966075 (-) | 1647 | WP_001094416.1 | IS66-like element ISAba17 family transposase | - |
| KRO88_RS04585 (KRO88_04555) | tnpB | 966150..966485 (-) | 336 | WP_000618090.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| KRO88_RS04590 (KRO88_04560) | - | 966482..966910 (-) | 429 | WP_000364662.1 | transposase | - |
| KRO88_RS04595 | - | 966992..967120 (-) | 129 | Protein_876 | hypothetical protein | - |
| KRO88_RS04600 (KRO88_04570) | - | 967532..967819 (-) | 288 | WP_001218560.1 | PA4642 family protein | - |
| KRO88_RS04605 (KRO88_04575) | minE | 967903..968175 (-) | 273 | WP_000896934.1 | cell division topological specificity factor MinE | - |
| KRO88_RS04610 (KRO88_04580) | minD | 968178..968990 (-) | 813 | WP_001074362.1 | septum site-determining protein MinD | - |
| KRO88_RS04615 (KRO88_04585) | minC | 969061..969783 (-) | 723 | WP_000763677.1 | septum site-determining protein MinC | - |
| KRO88_RS04620 (KRO88_04590) | - | 969905..970951 (-) | 1047 | WP_001181639.1 | hypothetical protein | - |
| KRO88_RS04625 (KRO88_04595) | - | 970968..971894 (-) | 927 | WP_000100965.1 | acyltransferase | - |
| KRO88_RS04630 (KRO88_04600) | - | 972139..972792 (+) | 654 | WP_001202415.1 | OmpA family protein | - |
| KRO88_RS04635 (KRO88_04605) | rep | 972986..975025 (+) | 2040 | WP_000093035.1 | DNA helicase Rep | - |
| KRO88_RS04640 (KRO88_04610) | dut | 975050..975502 (+) | 453 | WP_000868152.1 | dUTP diphosphatase | - |
| KRO88_RS04645 (KRO88_04615) | - | 975702..977120 (+) | 1419 | WP_001102845.1 | phosphomannomutase/phosphoglucomutase | - |
| KRO88_RS04650 (KRO88_04620) | argB | 977135..978043 (+) | 909 | WP_001135419.1 | acetylglutamate kinase | - |
| KRO88_RS04655 (KRO88_04625) | - | 978164..978946 (+) | 783 | WP_000890283.1 | GNAT family N-acetyltransferase | - |
| KRO88_RS04660 (KRO88_04630) | - | 979055..979903 (+) | 849 | WP_000336548.1 | class II glutamine amidotransferase | - |
| KRO88_RS04665 (KRO88_04635) | - | 980156..980611 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| KRO88_RS04670 (KRO88_04640) | - | 980764..981831 (+) | 1068 | WP_002019572.1 | hypothetical protein | - |
| KRO88_RS04675 (KRO88_04645) | - | 981831..982154 (+) | 324 | WP_000442587.1 | RnfH family protein | - |
| KRO88_RS04680 (KRO88_04650) | bamE | 982209..982607 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| KRO88_RS04685 (KRO88_04655) | fur | 982719..983156 (+) | 438 | WP_001122847.1 | ferric iron uptake transcriptional regulator | - |
| KRO88_RS04690 (KRO88_04660) | pilU | 983226..984344 (-) | 1119 | WP_000347039.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| KRO88_RS04695 (KRO88_04665) | pilT | 984372..985409 (-) | 1038 | WP_000355489.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KRO88_RS04700 (KRO88_04670) | - | 985536..986228 (+) | 693 | WP_001108512.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| KRO88_RS04705 (KRO88_04675) | - | 986430..990026 (-) | 3597 | WP_000698785.1 | SbcC/MukB-like Walker B domain-containing protein | - |
| KRO88_RS04710 (KRO88_04680) | - | 990036..991304 (-) | 1269 | WP_000116701.1 | exonuclease SbcCD subunit D | - |
| KRO88_RS04715 (KRO88_04685) | - | 991468..991941 (+) | 474 | WP_000974358.1 | OsmC family protein | - |
| KRO88_RS04720 (KRO88_04690) | - | 992009..992386 (-) | 378 | WP_001059438.1 | VOC family protein | - |
| KRO88_RS04725 (KRO88_04695) | - | 992766..993218 (+) | 453 | WP_000164153.1 | ABZJ_00895 family protein | - |
| KRO88_RS04730 (KRO88_04700) | - | 993308..994213 (+) | 906 | WP_001039356.1 | TIGR01777 family oxidoreductase | - |
| KRO88_RS04735 (KRO88_04705) | - | 994205..995320 (-) | 1116 | WP_000546701.1 | FAD-dependent oxidoreductase | - |
| KRO88_RS04740 (KRO88_04710) | hemB | 995346..996359 (-) | 1014 | WP_000222569.1 | porphobilinogen synthase | - |
| KRO88_RS04745 (KRO88_04715) | - | 996502..996999 (+) | 498 | WP_002019577.1 | thioesterase family protein | - |
| KRO88_RS04750 (KRO88_04720) | - | 997269..998420 (+) | 1152 | WP_000128703.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
| KRO88_RS04755 (KRO88_04725) | - | 998427..999950 (+) | 1524 | WP_000857095.1 | DHA2 family efflux MFS transporter permease subunit | - |
| KRO88_RS04760 (KRO88_04730) | ggt | 1000253..1002238 (+) | 1986 | WP_001042923.1 | gamma-glutamyltransferase | - |
| KRO88_RS04770 (KRO88_04740) | - | 1002940..1004169 (+) | 1230 | WP_001991065.1 | tyrosine-type recombinase/integrase | - |
| KRO88_RS04775 (KRO88_04745) | - | 1004317..1005084 (+) | 768 | WP_000578618.1 | hypothetical protein | - |
| KRO88_RS04780 (KRO88_04750) | - | 1005294..1005509 (+) | 216 | WP_000153154.1 | hypothetical protein | - |
| KRO88_RS04785 (KRO88_04755) | - | 1005512..1005721 (+) | 210 | WP_001016479.1 | helix-turn-helix domain-containing protein | - |
| KRO88_RS04790 (KRO88_04760) | - | 1005718..1006272 (+) | 555 | WP_001988245.1 | BRO family protein | - |
| KRO88_RS04795 (KRO88_04765) | - | 1006265..1006633 (+) | 369 | WP_001046481.1 | hypothetical protein | - |
| KRO88_RS04800 | - | 1006643..1006945 (+) | 303 | Protein_916 | hypothetical protein | - |
| KRO88_RS04805 (KRO88_04770) | - | 1007073..1007351 (+) | 279 | WP_001064707.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38312.92 Da Isoelectric Point: 6.7271
>NTDB_id=577904 KRO88_RS04695 WP_000355489.1 984372..985409(-) (pilT) [Acinetobacter baumannii strain X4-584]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL
Nucleotide
Download Length: 1038 bp
>NTDB_id=577904 KRO88_RS04695 WP_000355489.1 984372..985409(-) (pilT) [Acinetobacter baumannii strain X4-584]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACATCTTTCTGCTGGCATGCCACCAAT
GATTCGTGTTGACGGTGAAGTTCGTCGTATTAACTTACCAGCTCTAGAACATAAAGATGTCCACCGTCTTGTTTACGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCTAATGTTGCGCGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCCGGTGCAGTATTTCGTACCATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTCTAGGACAAATCTTTAAAGATATTTGCGACTATCCTCGTGGCATTGTACTGGTGACAGGACCAACAGGTT
CAGGTAAATCAACTACGCTTGCAGCGATGCTCGATTATATTAACGAAAACCGCTATGACCATATTTTAACGGTGGAAGAT
CCAATCGAATTTGTACACCAGTCTAAGAAATGTCTCATTAACCAGCGTGAAGTGCATCGTGACACACACGGCTTTAATGA
AGCACTTCGCTCAGCACTGCGTGAAGACCCTGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACTATTCGCTTGG
CATTAACCGCTGCCGAAACAGGTCACTTGGTGTTTGGTACACTACACACCACGTCGGCAGCAAAAACCATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCAGAATCTTTACAAGCGGTTATTTCACAAAC
CCTGCTTAAAAAGAATGGTGGTGGCCGTGTCGCAGCACATGAGATCATGATTGGTATTCCGGCTATTCGTAACTTAATTC
GTGAAAACAAAGTCGCACAAATGTACTCAGCCATTCAAACTGGTGCAAATCATGGCATGACCACCCTCGACCAAAGCTTA
AAAGGCTTAGTCGCTCGCGGTGTGATTAGCCCACAAACCGCACGTACTGCGGCAAAACAGCCTGAATCCTTCCTATAA
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACATCTTTCTGCTGGCATGCCACCAAT
GATTCGTGTTGACGGTGAAGTTCGTCGTATTAACTTACCAGCTCTAGAACATAAAGATGTCCACCGTCTTGTTTACGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCTAATGTTGCGCGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCCGGTGCAGTATTTCGTACCATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTCTAGGACAAATCTTTAAAGATATTTGCGACTATCCTCGTGGCATTGTACTGGTGACAGGACCAACAGGTT
CAGGTAAATCAACTACGCTTGCAGCGATGCTCGATTATATTAACGAAAACCGCTATGACCATATTTTAACGGTGGAAGAT
CCAATCGAATTTGTACACCAGTCTAAGAAATGTCTCATTAACCAGCGTGAAGTGCATCGTGACACACACGGCTTTAATGA
AGCACTTCGCTCAGCACTGCGTGAAGACCCTGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACTATTCGCTTGG
CATTAACCGCTGCCGAAACAGGTCACTTGGTGTTTGGTACACTACACACCACGTCGGCAGCAAAAACCATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCAGAATCTTTACAAGCGGTTATTTCACAAAC
CCTGCTTAAAAAGAATGGTGGTGGCCGTGTCGCAGCACATGAGATCATGATTGGTATTCCGGCTATTCGTAACTTAATTC
GTGAAAACAAAGTCGCACAAATGTACTCAGCCATTCAAACTGGTGCAAATCATGGCATGACCACCCTCGACCAAAGCTTA
AAAGGCTTAGTCGCTCGCGGTGTGATTAGCCCACAAACCGCACGTACTGCGGCAAAACAGCCTGAATCCTTCCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baumannii strain A118 |
100 |
100 |
1 |
| pilT | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |
| pilT | Acinetobacter nosocomialis M2 |
99.71 |
100 |
0.997 |
| pilT | Acinetobacter baylyi ADP1 |
88.953 |
99.71 |
0.887 |
| pilT | Pseudomonas aeruginosa PAK |
84.302 |
99.71 |
0.841 |
| pilT | Pseudomonas stutzeri DSM 10701 |
84.012 |
99.71 |
0.838 |
| pilT | Legionella pneumophila strain Lp02 |
75.581 |
99.71 |
0.754 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.581 |
99.71 |
0.754 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
71.726 |
97.391 |
0.699 |
| pilT | Vibrio cholerae strain A1552 |
71.726 |
97.391 |
0.699 |
| pilT | Neisseria meningitidis 8013 |
68.116 |
100 |
0.681 |
| pilT | Neisseria gonorrhoeae MS11 |
67.826 |
100 |
0.678 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.174 |
100 |
0.522 |
| pilU | Vibrio cholerae strain A1552 |
41.593 |
98.261 |
0.409 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.597 |
97.101 |
0.394 |
| pilU | Acinetobacter baylyi ADP1 |
38.728 |
100 |
0.388 |