Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   KLF39_RS09035 Genome accession   NZ_CP076004
Coordinates   1994436..1995488 (-) Length   350 a.a.
NCBI ID   WP_115639311.1    Uniprot ID   -
Organism   Clostridium perfringens strain 1293/86     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1989436..2000488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF39_RS09015 (KLF39_08935) sigE 1990029..1990736 (-) 708 WP_003449468.1 RNA polymerase sporulation sigma factor SigE -
  KLF39_RS09020 (KLF39_08940) spoIIGA 1990750..1991556 (-) 807 WP_011592644.1 sigma-E processing peptidase SpoIIGA -
  KLF39_RS09025 (KLF39_08945) ftsZ 1991961..1993106 (-) 1146 WP_111916955.1 cell division protein FtsZ -
  KLF39_RS09030 (KLF39_08950) - 1993120..1994358 (-) 1239 WP_011592646.1 cell division FtsA domain-containing protein -
  KLF39_RS09035 (KLF39_08955) pilT 1994436..1995488 (-) 1053 WP_115639311.1 type IV pilus twitching motility protein PilT Machinery gene
  KLF39_RS09040 (KLF39_08960) sigK 1995669..1996370 (-) 702 WP_011592648.1 RNA polymerase sporulation sigma factor SigK -
  KLF39_RS09045 (KLF39_08965) - 1996433..1998100 (-) 1668 WP_115639310.1 penicillin-binding transpeptidase domain-containing protein -
  KLF39_RS09050 (KLF39_08970) udk 1998212..1998838 (-) 627 WP_011592650.1 uridine kinase -
  KLF39_RS09055 (KLF39_08975) - 1998838..2000067 (-) 1230 WP_111916959.1 U32 family peptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39036.76 Da        Isoelectric Point: 5.4507

>NTDB_id=571301 KLF39_RS09035 WP_115639311.1 1994436..1995488(-) (pilT) [Clostridium perfringens strain 1293/86]
MQSLAELLELTVKEGASDLHLTVGISPIIKVNGKLVRLEHEILRPEDTEAYAKEILQDAYEKYDAIGEYDTSYSIHGKGR
FRVNIYKQRNSTALAIRVISLDMPTLDSLGYPETLKDICNLKRGLVLVTGPTGSGKSTTLAALINEINSNRESHIITIED
PIEFLHKHNKSIVNQREIGKDTLSYERALKAALREDPDVILIGEMRDLETISTAITAAETGHLVFSTLHTIGAAKTIDRI
VDVFPLHQQEQIKIQLASVLQTIISQQLVETIDGERTASLEIMVATPAIKNLIREGKTHQIESSIQTGSKYGMRTMDMEL
ANLYREGIITQETAMNSAIDREILSRLLMY

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=571301 KLF39_RS09035 WP_115639311.1 1994436..1995488(-) (pilT) [Clostridium perfringens strain 1293/86]
ATGCAAAGTTTAGCAGAACTTTTAGAGTTAACAGTTAAAGAAGGAGCATCTGATTTGCATTTAACAGTAGGTATTTCTCC
TATAATAAAAGTTAATGGAAAATTAGTAAGGTTAGAACATGAAATATTGCGCCCTGAAGATACTGAAGCGTATGCTAAAG
AGATATTACAGGATGCATATGAAAAGTATGATGCTATTGGAGAATACGATACATCATATTCAATACATGGTAAAGGTAGA
TTTAGAGTTAATATATATAAACAAAGAAATAGTACAGCTTTAGCTATAAGAGTTATATCTTTAGATATGCCAACTTTAGA
TAGTTTAGGATATCCTGAGACTTTAAAGGATATATGTAATCTTAAAAGAGGACTTGTATTAGTTACAGGACCTACTGGAA
GTGGTAAAAGTACAACTTTAGCAGCTTTAATCAATGAAATAAATAGTAATAGAGAATCTCATATAATAACAATAGAAGAT
CCTATAGAGTTTCTTCATAAACATAATAAATCTATTGTAAACCAAAGAGAGATAGGAAAGGATACTTTAAGTTATGAAAG
AGCCTTAAAAGCAGCTCTTAGAGAGGATCCTGATGTTATTTTGATTGGGGAAATGAGAGATTTGGAGACTATTTCAACAG
CTATAACAGCGGCAGAGACTGGACACTTAGTATTTTCAACTCTTCATACTATAGGAGCTGCTAAGACTATAGATAGAATA
GTGGATGTTTTTCCACTACATCAACAAGAGCAAATAAAAATACAGTTAGCTTCTGTTTTACAAACAATTATATCACAACA
ATTAGTGGAAACCATTGATGGAGAGAGAACTGCGTCATTAGAAATAATGGTTGCTACACCAGCTATAAAAAACTTAATAA
GAGAAGGAAAAACTCATCAAATAGAATCTTCTATCCAAACTGGAAGTAAATATGGAATGAGAACTATGGACATGGAACTT
GCTAATCTGTATAGAGAAGGTATAATAACACAAGAAACGGCAATGAATTCTGCTATAGATAGGGAAATTTTAAGTCGATT
ATTGATGTATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(78-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Neisseria meningitidis 8013

50

98.286

0.491
  pilT Neisseria gonorrhoeae MS11

50

98.286

0.491
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.422

98.857

0.489
  pilT Pseudomonas aeruginosa PAK

50.298

96

0.483
  pilT Legionella pneumophila strain ERS1305867

49.123

97.714

0.48
  pilT Legionella pneumophila strain Lp02

49.123

97.714

0.48
  pilT Acinetobacter baylyi ADP1

50.301

94.857

0.477
  pilT Acinetobacter baumannii D1279779

49.405

96

0.474
  pilT Acinetobacter nosocomialis M2

49.405

96

0.474
  pilT Pseudomonas stutzeri DSM 10701

49.405

96

0.474
  pilT Acinetobacter baumannii strain A118

49.405

96

0.474
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

93.429

0.471
  pilT Vibrio cholerae strain A1552

50.459

93.429

0.471
  pilU Pseudomonas stutzeri DSM 10701

43.976

94.857

0.417
  pilU Vibrio cholerae strain A1552

40.653

96.286

0.391
  pilU Acinetobacter baylyi ADP1

39.296

97.429

0.383