Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | HYDHO_RS01240 | Genome accession | NC_020411 |
| Coordinates | 212654..213733 (-) | Length | 359 a.a. |
| NCBI ID | WP_015418884.1 | Uniprot ID | M1RBV6 |
| Organism | Hydrogenobaculum sp. HO | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 207654..218733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYDHO_RS01215 (HydHO_0239) | - | 208099..208314 (-) | 216 | WP_015418878.1 | hypothetical protein | - |
| HYDHO_RS01220 (HydHO_0240) | - | 208311..209222 (-) | 912 | WP_015418879.1 | MoxR family ATPase | - |
| HYDHO_RS01225 (HydHO_0241) | - | 209243..211165 (-) | 1923 | WP_015418880.1 | GGDEF domain-containing protein | - |
| HYDHO_RS01230 (HydHO_0243) | - | 211460..211756 (+) | 297 | WP_237698614.1 | hypothetical protein | - |
| HYDHO_RS01235 (HydHO_0244) | recR | 211746..212345 (+) | 600 | WP_015418883.1 | recombination mediator RecR | - |
| HYDHO_RS01240 (HydHO_0245) | pilT | 212654..213733 (-) | 1080 | WP_015418884.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| HYDHO_RS01245 (HydHO_0246) | - | 213749..215428 (-) | 1680 | WP_015418885.1 | GspE/PulE family protein | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 40116.43 Da Isoelectric Point: 6.8596
>NTDB_id=56416 HYDHO_RS01240 WP_015418884.1 212654..213733(-) (pilT) [Hydrogenobaculum sp. HO]
MQLDIGTLTEILVKNRGSDIHIVAGSKPAIRVDGKIRFLEEYDTLTPDDTQMLAYGIMLEKYKKVFEEKNAVDFSIGIHS
LGRFRVNVFRQRDSISMVLRYLSSDIKDITKLGLEAKVLELTKRSMGLVLVTGPTGSGKSTTLASMIQYILDNEPAHVIT
VEDPIEYLFKHSKGIVNQRELGQDVPSFSDALRSALREDPDVILIGEMRDRETIEMALRAAETGHLVFGTLHTNTAISTI
NRIVDVFSAEEKDQIRTQLSISLQGIISQRLLPKIGGGRVLAYELLIPNAGIRNLIKENKLPQIYALMQSGQAQTGMQTM
NQHLRKLYGMGLITKEDALKYSPDPKELARLMGVAYEEI
MQLDIGTLTEILVKNRGSDIHIVAGSKPAIRVDGKIRFLEEYDTLTPDDTQMLAYGIMLEKYKKVFEEKNAVDFSIGIHS
LGRFRVNVFRQRDSISMVLRYLSSDIKDITKLGLEAKVLELTKRSMGLVLVTGPTGSGKSTTLASMIQYILDNEPAHVIT
VEDPIEYLFKHSKGIVNQRELGQDVPSFSDALRSALREDPDVILIGEMRDRETIEMALRAAETGHLVFGTLHTNTAISTI
NRIVDVFSAEEKDQIRTQLSISLQGIISQRLLPKIGGGRVLAYELLIPNAGIRNLIKENKLPQIYALMQSGQAQTGMQTM
NQHLRKLYGMGLITKEDALKYSPDPKELARLMGVAYEEI
Nucleotide
Download Length: 1080 bp
>NTDB_id=56416 HYDHO_RS01240 WP_015418884.1 212654..213733(-) (pilT) [Hydrogenobaculum sp. HO]
ATGCAGCTTGACATAGGAACGTTAACGGAGATACTTGTAAAAAATAGAGGAAGCGATATCCATATAGTAGCAGGCTCTAA
ACCTGCCATAAGAGTGGATGGCAAAATAAGGTTTTTAGAAGAATACGATACATTAACACCTGACGATACGCAAATGCTGG
CATACGGCATTATGCTTGAAAAATATAAAAAAGTATTTGAAGAAAAAAATGCGGTAGATTTTTCTATCGGAATACACAGT
TTAGGCAGATTTCGTGTAAACGTGTTTAGACAAAGAGACTCCATAAGCATGGTTTTAAGATACTTATCCAGCGATATAAA
AGATATTACAAAATTAGGATTAGAAGCAAAGGTATTAGAGCTTACAAAAAGGAGTATGGGACTTGTTTTAGTAACAGGTC
CAACCGGCAGTGGTAAATCAACGACCTTAGCATCGATGATACAATATATACTTGACAACGAACCAGCACATGTTATAACA
GTGGAAGACCCCATAGAATACCTTTTCAAACACAGCAAAGGCATAGTAAACCAACGCGAGTTAGGGCAAGACGTGCCAAG
TTTTTCCGATGCTTTAAGAAGCGCTTTAAGAGAAGACCCAGACGTAATATTAATAGGTGAAATGAGAGATAGAGAAACTA
TAGAAATGGCTTTAAGAGCAGCTGAAACCGGACACTTGGTATTTGGAACGCTTCATACAAATACAGCTATATCCACTATA
AACAGAATTGTAGATGTATTTAGCGCTGAAGAAAAGGATCAAATAAGGACGCAGCTCTCTATCTCTTTACAAGGTATCAT
ATCTCAAAGGCTTTTGCCTAAAATAGGCGGGGGCAGAGTGTTAGCTTACGAGCTTTTAATACCAAACGCAGGTATAAGAA
ACTTAATAAAAGAAAATAAGCTACCACAAATTTATGCATTGATGCAATCAGGTCAAGCTCAAACAGGTATGCAAACTATG
AACCAACACTTAAGAAAACTATACGGTATGGGGCTTATAACAAAAGAAGATGCTCTAAAATACAGTCCAGATCCAAAAGA
ATTGGCAAGGTTAATGGGTGTAGCTTACGAAGAGATATAA
ATGCAGCTTGACATAGGAACGTTAACGGAGATACTTGTAAAAAATAGAGGAAGCGATATCCATATAGTAGCAGGCTCTAA
ACCTGCCATAAGAGTGGATGGCAAAATAAGGTTTTTAGAAGAATACGATACATTAACACCTGACGATACGCAAATGCTGG
CATACGGCATTATGCTTGAAAAATATAAAAAAGTATTTGAAGAAAAAAATGCGGTAGATTTTTCTATCGGAATACACAGT
TTAGGCAGATTTCGTGTAAACGTGTTTAGACAAAGAGACTCCATAAGCATGGTTTTAAGATACTTATCCAGCGATATAAA
AGATATTACAAAATTAGGATTAGAAGCAAAGGTATTAGAGCTTACAAAAAGGAGTATGGGACTTGTTTTAGTAACAGGTC
CAACCGGCAGTGGTAAATCAACGACCTTAGCATCGATGATACAATATATACTTGACAACGAACCAGCACATGTTATAACA
GTGGAAGACCCCATAGAATACCTTTTCAAACACAGCAAAGGCATAGTAAACCAACGCGAGTTAGGGCAAGACGTGCCAAG
TTTTTCCGATGCTTTAAGAAGCGCTTTAAGAGAAGACCCAGACGTAATATTAATAGGTGAAATGAGAGATAGAGAAACTA
TAGAAATGGCTTTAAGAGCAGCTGAAACCGGACACTTGGTATTTGGAACGCTTCATACAAATACAGCTATATCCACTATA
AACAGAATTGTAGATGTATTTAGCGCTGAAGAAAAGGATCAAATAAGGACGCAGCTCTCTATCTCTTTACAAGGTATCAT
ATCTCAAAGGCTTTTGCCTAAAATAGGCGGGGGCAGAGTGTTAGCTTACGAGCTTTTAATACCAAACGCAGGTATAAGAA
ACTTAATAAAAGAAAATAAGCTACCACAAATTTATGCATTGATGCAATCAGGTCAAGCTCAAACAGGTATGCAAACTATG
AACCAACACTTAAGAAAACTATACGGTATGGGGCTTATAACAAAAGAAGATGCTCTAAAATACAGTCCAGATCCAAAAGA
ATTGGCAAGGTTAATGGGTGTAGCTTACGAAGAGATATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Legionella pneumophila strain Lp02 |
52.083 |
93.593 |
0.487 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.083 |
93.593 |
0.487 |
| pilT | Acinetobacter baylyi ADP1 |
50 |
96.379 |
0.482 |
| pilT | Acinetobacter baumannii D1279779 |
49.711 |
96.379 |
0.479 |
| pilT | Acinetobacter baumannii strain A118 |
49.711 |
96.379 |
0.479 |
| pilT | Acinetobacter nosocomialis M2 |
49.711 |
96.379 |
0.479 |
| pilT | Pseudomonas aeruginosa PAK |
48.844 |
96.379 |
0.471 |
| pilT | Pseudomonas stutzeri DSM 10701 |
48.266 |
96.379 |
0.465 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.714 |
97.493 |
0.465 |
| pilT | Neisseria meningitidis 8013 |
46.552 |
96.936 |
0.451 |
| pilT | Vibrio cholerae strain A1552 |
47.463 |
93.315 |
0.443 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.463 |
93.315 |
0.443 |
| pilT | Neisseria gonorrhoeae MS11 |
47.041 |
94.15 |
0.443 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.643 |
98.329 |
0.409 |
| pilU | Acinetobacter baylyi ADP1 |
39.368 |
96.936 |
0.382 |
| pilU | Vibrio cholerae strain A1552 |
38.596 |
95.265 |
0.368 |