Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | J9B92_RS04365 | Genome accession | NZ_CP073250 |
| Coordinates | 975486..976562 (+) | Length | 358 a.a. |
| NCBI ID | WP_115539360.1 | Uniprot ID | - |
| Organism | Cylindrospermopsis raciborskii N8 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 970486..981562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9B92_RS04345 | - | 970768..971010 (-) | 243 | WP_057178779.1 | sulfurtransferase TusA family protein | - |
| J9B92_RS04350 | dnaJ | 971020..972150 (-) | 1131 | WP_006276280.1 | molecular chaperone DnaJ | - |
| J9B92_RS04355 | grpE | 972435..973106 (-) | 672 | Protein_848 | nucleotide exchange factor GrpE | - |
| J9B92_RS04360 | pilB/pilB1 | 973450..975468 (+) | 2019 | WP_057178780.1 | GspE/PulE family protein | Machinery gene |
| J9B92_RS04365 | pilT | 975486..976562 (+) | 1077 | WP_115539360.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| J9B92_RS04370 | - | 976605..977864 (+) | 1260 | WP_102938614.1 | type II secretion system F family protein | - |
| J9B92_RS04375 | - | 977893..978897 (-) | 1005 | WP_211942468.1 | saccharopine dehydrogenase-like oxidoreductase | - |
| J9B92_RS04380 | - | 979562..980725 (+) | 1164 | WP_082604644.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 40022.41 Da Isoelectric Point: 7.1091
>NTDB_id=558563 J9B92_RS04365 WP_115539360.1 975486..976562(+) (pilT) [Cylindrospermopsis raciborskii N8]
MEYTIQELLQNLVDMGGSDLHLSASLRPYFRIGGKLTPIGNEILTPNECERLIFSMLNNDQRHRLEKTWELDCSYEIKAL
ARFRVNVYKERGNYAACLRVLSYKIPNFQELGLPNIVREIAEKPRGLVLVTGPTGSGKTTTLAAMIDLINQNRAEHILTI
EDPIEFVHEPIKSLIHQRQLGEDTRSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVLATLHTNSAAQTID
RIIDVFPAERQMQIRVQLSNSLLAVFSQILVPRKTVRPGGSSRVMAQEIMIVTPAIANLIREGKIAQIYSFIQTGSKLGM
QTLEKALYELFKAGLISQELALSKTSRPDEVQRLIGIL
MEYTIQELLQNLVDMGGSDLHLSASLRPYFRIGGKLTPIGNEILTPNECERLIFSMLNNDQRHRLEKTWELDCSYEIKAL
ARFRVNVYKERGNYAACLRVLSYKIPNFQELGLPNIVREIAEKPRGLVLVTGPTGSGKTTTLAAMIDLINQNRAEHILTI
EDPIEFVHEPIKSLIHQRQLGEDTRSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVLATLHTNSAAQTID
RIIDVFPAERQMQIRVQLSNSLLAVFSQILVPRKTVRPGGSSRVMAQEIMIVTPAIANLIREGKIAQIYSFIQTGSKLGM
QTLEKALYELFKAGLISQELALSKTSRPDEVQRLIGIL
Nucleotide
Download Length: 1077 bp
>NTDB_id=558563 J9B92_RS04365 WP_115539360.1 975486..976562(+) (pilT) [Cylindrospermopsis raciborskii N8]
ATGGAATACACAATTCAAGAACTGCTGCAAAATTTAGTAGATATGGGTGGTTCAGACCTGCATCTATCTGCAAGTTTAAG
ACCCTATTTTCGCATTGGTGGAAAACTGACTCCTATAGGTAATGAGATATTAACACCAAATGAATGTGAAAGACTGATTT
TTAGTATGTTGAATAATGACCAGCGTCACAGGTTAGAAAAAACCTGGGAGTTAGATTGTTCTTATGAAATAAAAGCTCTA
GCACGTTTTCGAGTTAACGTCTATAAAGAAAGGGGCAATTATGCAGCTTGTTTACGAGTTTTAAGTTATAAAATTCCCAA
TTTTCAAGAGTTAGGTTTGCCCAATATTGTTCGAGAAATAGCAGAAAAACCCAGAGGACTAGTTCTTGTTACAGGTCCCA
CCGGTTCTGGTAAAACCACTACCCTAGCTGCAATGATTGATTTAATCAACCAAAATCGAGCTGAACATATTCTAACCATA
GAAGACCCAATAGAATTTGTGCATGAGCCAATTAAAAGTTTAATCCACCAACGGCAATTAGGTGAAGATACACGGAGTTT
TGCCAATGCTTTAAAAGCAGCTTTACGAGAAGATCCAGATATTATTCTCGTGGGTGAAATGCGGGACCTAGAAACGATTT
CTTTAGCTATTTCCGCTGCGGAAACAGGTCATTTGGTCTTAGCCACATTACATACTAATTCAGCAGCACAGACGATTGAT
AGAATCATTGATGTTTTTCCTGCAGAACGACAAATGCAAATTAGAGTACAATTATCTAACTCCCTATTGGCAGTTTTCAG
TCAAATCCTAGTCCCTAGAAAAACCGTTAGACCAGGTGGATCTAGTCGGGTGATGGCACAGGAAATTATGATAGTTACTC
CAGCAATTGCTAACTTAATAAGGGAAGGAAAAATAGCCCAGATATATTCCTTTATTCAAACAGGAAGTAAATTGGGAATG
CAAACCTTAGAAAAAGCCCTATATGAGCTATTTAAAGCTGGTCTTATTTCTCAAGAACTAGCACTTTCTAAGACATCTAG
ACCGGATGAAGTGCAACGGTTAATTGGTATTTTGTAA
ATGGAATACACAATTCAAGAACTGCTGCAAAATTTAGTAGATATGGGTGGTTCAGACCTGCATCTATCTGCAAGTTTAAG
ACCCTATTTTCGCATTGGTGGAAAACTGACTCCTATAGGTAATGAGATATTAACACCAAATGAATGTGAAAGACTGATTT
TTAGTATGTTGAATAATGACCAGCGTCACAGGTTAGAAAAAACCTGGGAGTTAGATTGTTCTTATGAAATAAAAGCTCTA
GCACGTTTTCGAGTTAACGTCTATAAAGAAAGGGGCAATTATGCAGCTTGTTTACGAGTTTTAAGTTATAAAATTCCCAA
TTTTCAAGAGTTAGGTTTGCCCAATATTGTTCGAGAAATAGCAGAAAAACCCAGAGGACTAGTTCTTGTTACAGGTCCCA
CCGGTTCTGGTAAAACCACTACCCTAGCTGCAATGATTGATTTAATCAACCAAAATCGAGCTGAACATATTCTAACCATA
GAAGACCCAATAGAATTTGTGCATGAGCCAATTAAAAGTTTAATCCACCAACGGCAATTAGGTGAAGATACACGGAGTTT
TGCCAATGCTTTAAAAGCAGCTTTACGAGAAGATCCAGATATTATTCTCGTGGGTGAAATGCGGGACCTAGAAACGATTT
CTTTAGCTATTTCCGCTGCGGAAACAGGTCATTTGGTCTTAGCCACATTACATACTAATTCAGCAGCACAGACGATTGAT
AGAATCATTGATGTTTTTCCTGCAGAACGACAAATGCAAATTAGAGTACAATTATCTAACTCCCTATTGGCAGTTTTCAG
TCAAATCCTAGTCCCTAGAAAAACCGTTAGACCAGGTGGATCTAGTCGGGTGATGGCACAGGAAATTATGATAGTTACTC
CAGCAATTGCTAACTTAATAAGGGAAGGAAAAATAGCCCAGATATATTCCTTTATTCAAACAGGAAGTAAATTGGGAATG
CAAACCTTAGAAAAAGCCCTATATGAGCTATTTAAAGCTGGTCTTATTTCTCAAGAACTAGCACTTTCTAAGACATCTAG
ACCGGATGAAGTGCAACGGTTAATTGGTATTTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baylyi ADP1 |
54.493 |
96.369 |
0.525 |
| pilT | Legionella pneumophila strain Lp02 |
54.493 |
96.369 |
0.525 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.493 |
96.369 |
0.525 |
| pilT | Pseudomonas aeruginosa PAK |
53.333 |
96.369 |
0.514 |
| pilT | Acinetobacter baumannii strain A118 |
53.043 |
96.369 |
0.511 |
| pilT | Acinetobacter baumannii D1279779 |
53.043 |
96.369 |
0.511 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.043 |
96.369 |
0.511 |
| pilT | Acinetobacter nosocomialis M2 |
53.043 |
96.369 |
0.511 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.143 |
97.765 |
0.5 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
52.059 |
94.972 |
0.494 |
| pilT | Vibrio cholerae strain A1552 |
52.059 |
94.972 |
0.494 |
| pilT | Neisseria meningitidis 8013 |
51.335 |
94.134 |
0.483 |
| pilT | Neisseria gonorrhoeae MS11 |
51.335 |
94.134 |
0.483 |
| pilU | Acinetobacter baylyi ADP1 |
40.688 |
97.486 |
0.397 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40 |
99.162 |
0.397 |
| pilU | Vibrio cholerae strain A1552 |
37.037 |
98.045 |
0.363 |