Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LT978_RS04905 Genome accession   NZ_CP090838
Coordinates   964182..965312 (+) Length   376 a.a.
NCBI ID   WP_139889990.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 959182..970312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS04875 (LT978_04870) - 959400..960386 (-) 987 WP_139889989.1 Gfo/Idh/MocA family oxidoreductase -
  LT978_RS04880 (LT978_04875) - 960566..961726 (+) 1161 WP_003152148.1 AI-2E family transporter -
  LT978_RS04885 (LT978_04880) - 961818..962648 (+) 831 WP_007613337.1 undecaprenyl-diphosphate phosphatase -
  LT978_RS04895 (LT978_04890) - 963026..963289 (-) 264 WP_014305651.1 hypothetical protein -
  LT978_RS20060 - 963404..963532 (-) 129 WP_255219924.1 hypothetical protein -
  LT978_RS04900 (LT978_04895) - 963659..963862 (-) 204 WP_044052958.1 hypothetical protein -
  LT978_RS04905 (LT978_04900) rapC 964182..965312 (+) 1131 WP_139889990.1 Rap family tetratricopeptide repeat protein Regulator
  LT978_RS20065 - 965447..965572 (+) 126 WP_015387808.1 hypothetical protein -
  LT978_RS04910 (LT978_04905) - 965628..965812 (-) 185 Protein_981 hypothetical protein -
  LT978_RS04915 (LT978_04910) - 966572..966892 (+) 321 WP_063174644.1 hypothetical protein -
  LT978_RS04920 (LT978_04915) - 966945..967586 (-) 642 WP_139889991.1 cupin domain-containing protein -
  LT978_RS04925 (LT978_04920) hmpA 967804..968979 (+) 1176 WP_139889993.1 NO-inducible flavohemoprotein -
  LT978_RS04930 (LT978_04925) - 969122..969967 (+) 846 WP_107994260.1 glucosaminidase domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44335.74 Da        Isoelectric Point: 6.6662

>NTDB_id=555638 LT978_RS04905 WP_139889990.1 964182..965312(+) (rapC) [Bacillus amyloliquefaciens strain TL106]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHNEIERAEFHFKLAEAYYGMKQSHVSMHH
AKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQLGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=555638 LT978_RS04905 WP_139889990.1 964182..965312(+) (rapC) [Bacillus amyloliquefaciens strain TL106]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTACTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATAATG
AAATTGAGAGAGCGGAATTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGTCACGTCTCTATGCATCAC
GCAAAGCAAGCACTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTATTCGTCATCTCTGG
GAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCTCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGTAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAATTGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(193-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.327

100

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

40.106

100

0.404