Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUZ00_RS06720 Genome accession   NZ_CP089498
Coordinates   1334117..1334890 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain M03/0073_III_ST239     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329117..1339890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ00_RS06700 trmFO 1329461..1330768 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LUZ00_RS06705 xerC 1331185..1332081 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUZ00_RS06710 hslV 1332078..1332623 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUZ00_RS06715 hslU 1332689..1334092 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUZ00_RS06720 codY 1334117..1334890 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUZ00_RS06725 - 1334941..1335033 (+) 93 WP_001790530.1 hypothetical protein -
  LUZ00_RS06730 rpsB 1335232..1335999 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUZ00_RS06735 - 1336033..1336146 (+) 114 WP_001789890.1 hypothetical protein -
  LUZ00_RS06740 tsf 1336181..1337062 (+) 882 WP_000201387.1 translation elongation factor Ts -
  LUZ00_RS06745 pyrH 1337199..1337921 (+) 723 WP_000057330.1 UMP kinase -
  LUZ00_RS06750 frr 1337940..1338494 (+) 555 WP_001280006.1 ribosome recycling factor -
  LUZ00_RS06755 - 1338867..1339637 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=551389 LUZ00_RS06720 WP_000055337.1 1334117..1334890(+) (codY) [Staphylococcus aureus strain M03/0073_III_ST239]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=551389 LUZ00_RS06720 WP_000055337.1 1334117..1334890(+) (codY) [Staphylococcus aureus strain M03/0073_III_ST239]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428