Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DEIPE_RS10485 Genome accession   NC_019793
Coordinates   2127562..2128713 (-) Length   383 a.a.
NCBI ID   WP_015235945.1    Uniprot ID   L0A3R9
Organism   Deinococcus peraridilitoris DSM 19664     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122562..2133713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS10455 (Deipe_2144) - 2123229..2123666 (-) 438 WP_015235939.1 SufE family protein -
  DEIPE_RS10460 (Deipe_2145) - 2123818..2124678 (+) 861 WP_015235940.1 sulfurtransferase -
  DEIPE_RS10465 (Deipe_2146) - 2124730..2125722 (-) 993 WP_015235941.1 metallophosphoesterase -
  DEIPE_RS10470 (Deipe_2147) - 2125917..2126375 (-) 459 WP_015235942.1 helix-turn-helix domain-containing protein -
  DEIPE_RS10475 (Deipe_2148) - 2126680..2126964 (+) 285 WP_015235943.1 hypothetical protein -
  DEIPE_RS10480 (Deipe_2149) - 2127254..2127469 (-) 216 WP_015235944.1 hypothetical protein -
  DEIPE_RS10485 (Deipe_2150) pilT 2127562..2128713 (-) 1152 WP_015235945.1 type IV pilus twitching motility protein PilT Machinery gene
  DEIPE_RS10490 (Deipe_2151) pilB 2128764..2131430 (-) 2667 WP_015235946.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  DEIPE_RS10495 (Deipe_2152) - 2131482..2131988 (-) 507 WP_015235947.1 YqeG family HAD IIIA-type phosphatase -
  DEIPE_RS10500 (Deipe_2153) pgeF 2132044..2132805 (-) 762 WP_015235948.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41973.00 Da        Isoelectric Point: 7.1337

>NTDB_id=55091 DEIPE_RS10485 WP_015235945.1 2127562..2128713(-) (pilT) [Deinococcus peraridilitoris DSM 19664]
MPTSTDITDILRLAAERGASDVIVTAGLPPQFKVHGDYTGFDFEPLEATDTRKLMYSMMNEKQQRTFEEKRELDFSFSLG
DRARFRVNAFQQRGAVGGVLRLIPTKIKSVQELGLPATCVEIANAPRGLVLVTGPTGSGKSTTLAAMIDHINVTKRMHIM
TIEDPIEFLHPHKNSIINQREIGSDSWGFDNALRAVLRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPES
IDRIVDVFPEEQQAQIRVQLANNLVAVMTQQLLPRSDREGRIMAYEILVATPAVRALIREGKTYQITSVMQTGAQLGMQT
MDSYLAGLYRRRVISYDVGLERAVDPKEFARLATDAAGSGAPGKPAPAPAPQPASGSTQFGRR

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=55091 DEIPE_RS10485 WP_015235945.1 2127562..2128713(-) (pilT) [Deinococcus peraridilitoris DSM 19664]
ATGCCCACGTCCACCGACATCACCGACATCCTGCGCCTGGCCGCCGAACGGGGCGCCTCGGACGTCATCGTGACGGCCGG
CCTGCCGCCCCAGTTCAAGGTGCACGGCGACTACACCGGCTTTGATTTCGAGCCGCTGGAAGCCACCGACACCCGCAAGC
TGATGTACAGCATGATGAACGAAAAGCAGCAGCGCACCTTCGAGGAAAAGCGCGAGCTCGACTTCTCGTTCTCGCTGGGA
GACCGCGCGCGCTTTCGCGTGAATGCCTTTCAGCAGCGTGGCGCGGTGGGCGGGGTGCTGCGTCTGATTCCCACCAAGAT
CAAGAGCGTGCAGGAACTGGGCCTGCCCGCCACCTGCGTCGAGATCGCCAACGCCCCGCGCGGCCTGGTGCTGGTCACCG
GCCCCACCGGCTCAGGCAAGTCGACCACGCTGGCGGCCATGATCGACCACATCAACGTCACCAAGCGCATGCACATCATG
ACCATCGAGGACCCCATCGAGTTTCTGCATCCCCACAAGAACTCGATCATCAACCAGCGCGAGATCGGCAGCGATTCCTG
GGGCTTTGACAACGCCCTGCGCGCGGTGCTGCGTCAGGCTCCCGACGTGATATTGGTCGGCGAAATGCGTGACTACGAAA
CCATCAAGGCCGCCGTGACCGCCGCCGAAACCGGGCACCTGGTGATGGGCACCCTGCACACCAACAGCGCACCCGAGTCG
ATTGACCGCATCGTGGACGTCTTCCCGGAAGAGCAGCAGGCCCAGATCCGCGTGCAGCTCGCCAACAACCTGGTGGCGGT
CATGACACAGCAACTCCTGCCCCGGTCCGACCGCGAAGGGCGCATCATGGCTTACGAGATCCTGGTGGCCACCCCGGCCG
TGCGCGCCCTGATCCGCGAAGGCAAGACTTACCAGATCACCAGCGTCATGCAGACCGGCGCGCAGCTGGGCATGCAGACC
ATGGATTCGTACCTGGCAGGCCTCTACCGCCGCCGGGTGATCAGCTACGACGTGGGCCTCGAGCGCGCCGTCGATCCCAA
GGAGTTCGCGCGCCTCGCGACCGACGCTGCGGGCAGCGGCGCGCCGGGCAAGCCCGCTCCGGCGCCCGCGCCGCAGCCCG
CGTCGGGCAGCACCCAGTTCGGGCGCCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0A3R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

76.726

100

0.783
  pilT Pseudomonas aeruginosa PAK

52.907

89.817

0.475
  pilT Pseudomonas stutzeri DSM 10701

52.616

89.817

0.473
  pilT Acinetobacter nosocomialis M2

51.744

89.817

0.465
  pilT Acinetobacter baumannii D1279779

51.744

89.817

0.465
  pilT Acinetobacter baumannii strain A118

51.744

89.817

0.465
  pilT Neisseria meningitidis 8013

50.872

89.817

0.457
  pilT Neisseria gonorrhoeae MS11

50.291

89.817

0.452
  pilT Acinetobacter baylyi ADP1

50

89.817

0.449
  pilT Legionella pneumophila strain ERS1305867

49.709

89.817

0.446
  pilT Legionella pneumophila strain Lp02

49.709

89.817

0.446
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.696

90.078

0.439
  pilT Vibrio cholerae strain A1552

48.696

90.078

0.439
  pilU Pseudomonas stutzeri DSM 10701

45.808

87.206

0.399
  pilU Acinetobacter baylyi ADP1

43.768

90.078

0.394

Multiple sequence alignment