Detailed information NTG0055092

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: DEIPE_RS10490
• Genome accession: NC_019793
• Coordinates: 2128764..2131430 (-)
• Length: 888 a.a.
• NCBI ID: WP_015235946.1
• Uniprot ID: L0A1E6
• Organism: Deinococcus peraridilitoris DSM 19664
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2123764..2136430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIPE_RS10460 (Deipe_2145)	-	2123818..2124678 (+)	861	WP_015235940.1	sulfurtransferase	-
DEIPE_RS10465 (Deipe_2146)	-	2124730..2125722 (-)	993	WP_015235941.1	metallophosphoesterase	-
DEIPE_RS10470 (Deipe_2147)	-	2125917..2126375 (-)	459	WP_015235942.1	helix-turn-helix domain-containing protein	-
DEIPE_RS10475 (Deipe_2148)	-	2126680..2126964 (+)	285	WP_015235943.1	hypothetical protein	-
DEIPE_RS10480 (Deipe_2149)	-	2127254..2127469 (-)	216	WP_015235944.1	hypothetical protein	-
DEIPE_RS10485 (Deipe_2150)	pilT	2127562..2128713 (-)	1152	WP_015235945.1	type IV pilus twitching motility protein PilT	Machinery gene
DEIPE_RS10490 (Deipe_2151)	pilB	2128764..2131430 (-)	2667	WP_015235946.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
DEIPE_RS10495 (Deipe_2152)	-	2131482..2131988 (-)	507	WP_015235947.1	YqeG family HAD IIIA-type phosphatase	-
DEIPE_RS10500 (Deipe_2153)	pgeF	2132044..2132805 (-)	762	WP_015235948.1	peptidoglycan editing factor PgeF	-
DEIPE_RS10505 (Deipe_2154)	-	2132941..2133726 (+)	786	WP_217218486.1	enoyl-ACP reductase	-
DEIPE_RS23130 (Deipe_2155)	-	2133843..2133980 (-)	138	WP_083865793.1	ATP-binding protein	-

Sequence

Protein

• Length: 888 a.a.
• Molecular weight: 96905.69 Da
• Isoelectric Point: 4.8523

>NTDB_id=55092 DEIPE_RS10490 WP_015235946.1 2128764..2131430(-) (pilB) [Deinococcus peraridilitoris DSM 19664]
MALSIGDRRLGAILLEQGYVNDNDLQRALDRHGEVGGRLSDILIDTGLVGAKRIARAVEEALGIPLVNLVVVQPTPEALA
VLPAKVAQTLLAVPFAVVGGNLRVAFVDPLNSLTIETVEDECGMTVEPYQALREQVQWAIAHHYPELGLDVPQPTDGSEG
QGEQLGARLVRRGYVSQEDLDAALVKQKELEEPLGTVLVHLGALTEEQLYMVLAEQANVIFIRNPRDYEPDEATLGLLLR
AEALRLSAVPLEEKDGVVTVVTSDPRRREEIERVIGRPLQLALSRPNDVENLIERLYPQKGRLGEAMVQQGTLSRSQLRE
ALQVQSREGRVKPLGEVIVELGYAGSGEIEEALEKQHSGGGRLEDTLVQSGKISPEMLARSLAVQLGYEFLDGGKTTPDA
GVATLVPEATARRYSVMPIRMQGGSLVVAMKDPRNVFALDDLRIVVGRDIVPAVMAEKDITRLIERTFGGSDMAALNKEL
AASAKAKESARDEADLNAALDDNAVVRVVDNIIREAALQEASDIHIEPGESSIKVRLRIDGALREYQELPKASGASIVAR
IKIIGQLDIAEKRVPQDGRVRFKRGSIDLDLRLSTLPTVYGEKIVMRLLQKASNIPEVEQLGFSEHNYQRFIDTIEKPYG
IFLITGPTGSGKSFSTFSILKRISTPDSNTTTIEDPVEYEIPGINQTQVNNAAGLTFARALRSFLRQDPDIIMVGEIRDT
ETAQIATEAALTGHLVIATLHTNDAPGAITRLEEMGVESFNIGAALIGVLGQRLVRKICQECKIETTPDPEVLRKLGIPE
EQLDGAKLYRGAGCTRCNGTGYRGRMAIHELMVVDDSVRRAVSQKLDATGIREVARRESHMRTLREDGLEKAMAGLTTLE
EILGNTNA

Nucleotide

• Length: 2667 bp

>NTDB_id=55092 DEIPE_RS10490 WP_015235946.1 2128764..2131430(-) (pilB) [Deinococcus peraridilitoris DSM 19664]
GTGGCACTTTCCATTGGTGACCGGCGTCTTGGCGCGATTCTGCTCGAGCAGGGCTACGTCAACGACAACGACCTGCAACG
CGCACTCGACCGCCACGGCGAAGTCGGTGGCCGACTCAGCGACATCCTGATCGACACCGGTCTGGTGGGCGCCAAGCGCA
TCGCACGGGCCGTGGAAGAAGCCCTGGGCATCCCCCTGGTCAACCTGGTGGTGGTGCAGCCCACTCCCGAAGCGTTGGCC
GTACTGCCCGCCAAAGTGGCGCAGACGTTGCTGGCCGTGCCGTTTGCAGTGGTGGGTGGAAACCTGCGGGTGGCCTTTGT
CGATCCGCTCAATTCACTGACCATCGAGACCGTCGAGGACGAGTGCGGCATGACCGTCGAGCCGTACCAGGCGTTGCGTG
AGCAGGTGCAGTGGGCCATCGCTCACCACTATCCGGAGCTGGGCCTTGACGTTCCCCAACCGACGGACGGCAGCGAGGGC
CAGGGCGAGCAGCTCGGCGCACGGCTGGTGCGGCGCGGCTACGTCTCGCAAGAAGACCTCGATGCGGCACTTGTCAAGCA
AAAAGAGCTTGAGGAGCCGCTGGGCACCGTGCTGGTGCATTTGGGCGCCCTGACCGAGGAACAGCTTTACATGGTGCTGG
CCGAGCAGGCCAACGTGATCTTCATTCGCAATCCGCGCGATTACGAACCCGACGAGGCGACGCTCGGCCTGCTGCTGCGC
GCGGAAGCGCTGCGCCTGAGCGCCGTGCCGCTGGAGGAAAAAGATGGCGTCGTGACGGTCGTGACCAGCGATCCACGGCG
GCGTGAGGAGATCGAAAGGGTGATCGGCAGGCCATTGCAGCTGGCGCTGTCCCGCCCTAACGATGTCGAGAACCTGATCG
AGCGGCTGTATCCCCAAAAAGGACGCCTCGGTGAGGCCATGGTGCAGCAGGGCACGCTGTCGCGCTCGCAGCTGCGCGAA
GCCCTGCAGGTCCAGTCGCGCGAAGGCCGGGTCAAACCCCTGGGCGAGGTGATCGTCGAACTGGGTTACGCGGGCAGCGG
CGAGATCGAGGAAGCGCTCGAGAAGCAGCACAGCGGCGGCGGCCGACTTGAGGATACGCTGGTGCAGTCGGGCAAGATCA
GCCCCGAAATGCTGGCGCGCAGCCTCGCGGTGCAGTTGGGCTACGAATTCCTCGACGGCGGCAAGACCACTCCTGACGCG
GGCGTGGCCACCCTGGTTCCCGAAGCGACCGCCCGGCGCTACAGCGTGATGCCCATCCGTATGCAAGGGGGCTCCCTGGT
TGTCGCCATGAAAGACCCGCGCAACGTCTTCGCGCTTGACGACCTGCGCATCGTGGTAGGGCGCGACATCGTTCCGGCGG
TGATGGCGGAAAAGGACATCACCCGCCTGATCGAACGCACCTTTGGCGGCAGCGACATGGCGGCCCTCAACAAGGAGCTG
GCCGCGAGCGCCAAGGCCAAGGAAAGCGCGCGTGACGAGGCCGACCTCAACGCGGCCCTGGACGACAACGCCGTGGTGCG
GGTGGTGGACAACATCATCCGTGAAGCGGCGCTGCAGGAAGCCAGCGACATTCACATCGAGCCCGGCGAGTCGAGCATCA
AGGTGCGCCTGCGCATCGACGGCGCGCTGCGCGAGTACCAGGAACTGCCCAAGGCCTCGGGTGCCAGCATCGTGGCACGC
ATCAAGATCATCGGGCAGCTCGACATCGCCGAAAAGCGCGTGCCCCAGGACGGCCGGGTGCGCTTCAAGCGCGGTTCCAT
CGACCTCGATCTGCGTCTCTCGACGCTGCCCACGGTGTACGGCGAGAAAATCGTGATGCGCCTGCTCCAGAAGGCCAGCA
ACATTCCCGAAGTCGAGCAGCTGGGTTTCAGCGAGCACAATTACCAGCGCTTCATCGACACCATCGAAAAACCGTACGGC
ATCTTCCTGATCACCGGACCGACCGGCTCGGGCAAGTCCTTTTCGACCTTCTCGATTCTCAAGCGCATCTCGACGCCCGA
CAGCAACACCACCACCATCGAGGACCCGGTCGAGTACGAGATTCCCGGCATCAACCAGACCCAGGTCAACAACGCCGCTG
GCCTGACCTTTGCGCGCGCGCTGCGCAGCTTTCTGCGACAGGACCCCGACATCATCATGGTCGGCGAAATCCGTGACACC
GAAACCGCGCAGATCGCCACCGAGGCGGCCCTCACCGGACACCTGGTGATCGCCACCCTGCACACCAACGACGCGCCGGG
CGCCATCACCCGCCTCGAGGAGATGGGCGTGGAGTCCTTCAACATCGGCGCGGCGCTGATCGGCGTACTGGGACAGCGCC
TGGTGCGCAAGATCTGCCAGGAGTGCAAGATCGAGACCACCCCCGACCCCGAGGTGCTGCGCAAGCTGGGCATCCCAGAA
GAGCAGCTTGACGGCGCCAAGCTGTACCGGGGCGCGGGCTGCACGCGCTGCAACGGTACCGGCTACAGGGGCCGCATGGC
CATTCACGAGCTGATGGTGGTGGACGACAGTGTCCGGCGCGCGGTCAGCCAGAAACTCGACGCCACCGGCATCCGTGAAG
TCGCGCGCCGGGAGTCGCACATGCGCACGCTGCGTGAGGACGGCCTGGAAAAAGCCATGGCCGGTCTGACCACGCTCGAA
GAAATTCTCGGCAACACCAACGCCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (512-777)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (198-301)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-146)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (367-470)

3D structure

• AlphaFold DB: L0A1E6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	66.892	100	0.669
pilF	Thermus thermophilus HB27	57.735	100	0.58