Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J5I97_RS04805 Genome accession   NZ_CP071955
Coordinates   1034097..1034507 (+) Length   136 a.a.
NCBI ID   WP_208589542.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YL19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029097..1039507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5I97_RS04790 coaE 1030956..1031588 (-) 633 WP_208589532.1 dephospho-CoA kinase -
  J5I97_RS04795 - 1031602..1032465 (-) 864 WP_208589534.1 A24 family peptidase -
  J5I97_RS04800 pilC 1032473..1033729 (-) 1257 WP_208591561.1 type II secretion system F family protein Machinery gene
  J5I97_RS04805 pilA 1034097..1034507 (+) 411 WP_208589542.1 pilin Machinery gene
  J5I97_RS04810 pilA/pilAI 1034582..1034989 (+) 408 WP_208589544.1 pilin Machinery gene
  J5I97_RS04815 pilB 1035106..1036842 (+) 1737 WP_208589545.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J5I97_RS04820 - 1036889..1037485 (-) 597 WP_208589553.1 Fic family protein -
  J5I97_RS04825 - 1037482..1037664 (-) 183 WP_208589555.1 YhfG family protein -
  J5I97_RS04830 pilR 1037739..1039187 (-) 1449 WP_208591562.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14237.59 Da        Isoelectric Point: 8.4936

>NTDB_id=549394 J5I97_RS04805 WP_208589542.1 1034097..1034507(+) (pilA) [Xanthomonas fragariae strain YL19]
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAITGIGDLGLRSPTERCA
ITEITTLSATGTIVCTLKGNTQVKDKTVTLTRRTDGTWTCATTAAAKHAPAGCPGV

Nucleotide


Download         Length: 411 bp        

>NTDB_id=549394 J5I97_RS04805 WP_208589542.1 1034097..1034507(+) (pilA) [Xanthomonas fragariae strain YL19]
ATGAAGAAGCAGAACGGTTTTACGCTGATCGAACTGATGATCGTTATTGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTACCAGGACTATGTGGCCAAGTCGCAGGTGACAGCTGGCCTGGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTTGCCTTGAACGAAGGCAAGACTGCTATCACCGGTATTGGTGATTTGGGCCTGCGCTCGCCGACTGAACGCTGTGCC
ATCACCGAAATCACGACGCTGAGCGCGACAGGTACGATTGTTTGCACCTTGAAGGGTAATACTCAGGTGAAGGACAAAAC
TGTCACTCTGACGCGTCGTACGGATGGTACTTGGACCTGCGCGACCACTGCTGCCGCCAAGCATGCGCCGGCAGGCTGCC
CGGGCGTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

51.825

100

0.522
  pilA/pilAI Pseudomonas stutzeri DSM 10701

51.852

99.265

0.515
  pilA Pseudomonas aeruginosa PAK

41.216

100

0.449
  pilA2 Legionella pneumophila str. Paris

42.254

100

0.441
  pilA2 Legionella pneumophila strain ERS1305867

42.254

100

0.441
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.361

97.794

0.434
  pilA Vibrio cholerae strain A1552

41.844

100

0.434
  pilA Vibrio cholerae C6706

41.844

100

0.434
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.844

100

0.434
  comP Acinetobacter baylyi ADP1

38.514

100

0.419
  pilA/pilA1 Eikenella corrodens VA1

37.589

100

0.39
  pilA Haemophilus influenzae Rd KW20

35.915

100

0.375
  pilE Neisseria gonorrhoeae MS11

39.2

91.912

0.36