Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | J5I97_RS04810 | Genome accession | NZ_CP071955 |
| Coordinates | 1034582..1034989 (+) | Length | 135 a.a. |
| NCBI ID | WP_208589544.1 | Uniprot ID | - |
| Organism | Xanthomonas fragariae strain YL19 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1029582..1039989
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5I97_RS04790 | coaE | 1030956..1031588 (-) | 633 | WP_208589532.1 | dephospho-CoA kinase | - |
| J5I97_RS04795 | - | 1031602..1032465 (-) | 864 | WP_208589534.1 | A24 family peptidase | - |
| J5I97_RS04800 | pilC | 1032473..1033729 (-) | 1257 | WP_208591561.1 | type II secretion system F family protein | Machinery gene |
| J5I97_RS04805 | pilA | 1034097..1034507 (+) | 411 | WP_208589542.1 | pilin | Machinery gene |
| J5I97_RS04810 | pilA/pilAI | 1034582..1034989 (+) | 408 | WP_208589544.1 | pilin | Machinery gene |
| J5I97_RS04815 | pilB | 1035106..1036842 (+) | 1737 | WP_208589545.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| J5I97_RS04820 | - | 1036889..1037485 (-) | 597 | WP_208589553.1 | Fic family protein | - |
| J5I97_RS04825 | - | 1037482..1037664 (-) | 183 | WP_208589555.1 | YhfG family protein | - |
| J5I97_RS04830 | pilR | 1037739..1039187 (-) | 1449 | WP_208591562.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13987.11 Da Isoelectric Point: 8.1079
>NTDB_id=549395 J5I97_RS04810 WP_208589544.1 1034582..1034989(+) (pilA/pilAI) [Xanthomonas fragariae strain YL19]
MSGQKGFSLIELMIVIAIIAILAAIAFPAYQSSVAKAQLTAALAEIRPAKTTLETVVQDGRDPSLVDKSYVGLTASTRCS
SVSATLDSSGVGEISCTLQGSSLVSGRDLKLKRSAAGLWACDASAFDQKYRPAGC
MSGQKGFSLIELMIVIAIIAILAAIAFPAYQSSVAKAQLTAALAEIRPAKTTLETVVQDGRDPSLVDKSYVGLTASTRCS
SVSATLDSSGVGEISCTLQGSSLVSGRDLKLKRSAAGLWACDASAFDQKYRPAGC
Nucleotide
Download Length: 408 bp
>NTDB_id=549395 J5I97_RS04810 WP_208589544.1 1034582..1034989(+) (pilA/pilAI) [Xanthomonas fragariae strain YL19]
ATGTCTGGGCAGAAAGGCTTTTCTCTAATAGAGTTGATGATTGTCATAGCGATTATTGCCATATTAGCTGCTATAGCATT
TCCGGCTTATCAAAGTTCCGTGGCAAAAGCGCAGCTTACCGCTGCATTGGCCGAAATAAGGCCAGCGAAAACAACGCTTG
AAACGGTGGTGCAGGATGGCAGGGATCCATCGCTCGTTGATAAAAGTTACGTGGGTTTGACAGCATCTACCAGGTGTTCC
AGCGTCAGTGCGACTCTGGATTCCTCCGGGGTTGGTGAAATTAGTTGTACTCTTCAAGGGTCTTCCCTGGTTTCAGGACG
TGATTTAAAGTTGAAGCGTTCTGCTGCTGGTCTATGGGCCTGTGACGCCTCTGCTTTTGACCAAAAATATCGCCCTGCTG
GTTGTTGA
ATGTCTGGGCAGAAAGGCTTTTCTCTAATAGAGTTGATGATTGTCATAGCGATTATTGCCATATTAGCTGCTATAGCATT
TCCGGCTTATCAAAGTTCCGTGGCAAAAGCGCAGCTTACCGCTGCATTGGCCGAAATAAGGCCAGCGAAAACAACGCTTG
AAACGGTGGTGCAGGATGGCAGGGATCCATCGCTCGTTGATAAAAGTTACGTGGGTTTGACAGCATCTACCAGGTGTTCC
AGCGTCAGTGCGACTCTGGATTCCTCCGGGGTTGGTGAAATTAGTTGTACTCTTCAAGGGTCTTCCCTGGTTTCAGGACG
TGATTTAAAGTTGAAGCGTTCTGCTGCTGGTCTATGGGCCTGTGACGCCTCTGCTTTTGACCAAAAATATCGCCCTGCTG
GTTGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.794 |
100 |
0.481 |
| pilA | Acinetobacter baumannii strain A118 |
43.885 |
100 |
0.452 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.444 |
100 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
38.776 |
100 |
0.422 |
| pilA | Pseudomonas aeruginosa PAK |
38.255 |
100 |
0.422 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
33.333 |
100 |
0.4 |
| pilE | Neisseria gonorrhoeae MS11 |
32.121 |
100 |
0.393 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.364 |
100 |
0.385 |
| pilA | Vibrio cholerae C6706 |
36.364 |
100 |
0.385 |
| pilA | Vibrio cholerae strain A1552 |
36.364 |
100 |
0.385 |
| pilA2 | Legionella pneumophila str. Paris |
37.5 |
100 |
0.378 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
36.765 |
100 |
0.37 |