Detailed information NTG0549393

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: J5I97_RS04800
• Genome accession: NZ_CP071955
• Coordinates: 1032473..1033729 (-)
• Length: 418 a.a.
• NCBI ID: WP_208591561.1
• Uniprot ID: -
• Organism: Xanthomonas fragariae strain YL19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1027473..1038729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5I97_RS04790	coaE	1030956..1031588 (-)	633	WP_208589532.1	dephospho-CoA kinase	-
J5I97_RS04795	-	1031602..1032465 (-)	864	WP_208589534.1	A24 family peptidase	-
J5I97_RS04800	pilC	1032473..1033729 (-)	1257	WP_208591561.1	type II secretion system F family protein	Machinery gene
J5I97_RS04805	pilA	1034097..1034507 (+)	411	WP_208589542.1	pilin	Machinery gene
J5I97_RS04810	pilA/pilAI	1034582..1034989 (+)	408	WP_208589544.1	pilin	Machinery gene
J5I97_RS04815	pilB	1035106..1036842 (+)	1737	WP_208589545.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J5I97_RS04820	-	1036889..1037485 (-)	597	WP_208589553.1	Fic family protein	-
J5I97_RS04825	-	1037482..1037664 (-)	183	WP_208589555.1	YhfG family protein	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45508.83 Da
• Isoelectric Point: 10.3013

>NTDB_id=549393 J5I97_RS04800 WP_208591561.1 1032473..1033729(-) (pilC) [Xanthomonas fragariae strain YL19]
MAAVRSAVKSKPTSQVEQMSTFVWEGTDKRGVKMKGEQTSKNQNLLRAELRRQGITPTVVKAKPKPLFGAAGKKITAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPAMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSWWWLI
LFVAIGAVVGFIFAYKRSPAMQHGMDRLILKVPIIGQVMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=549393 J5I97_RS04800 WP_208591561.1 1032473..1033729(-) (pilC) [Xanthomonas fragariae strain YL19]
ATGGCAGCAGTGCGTAGTGCAGTCAAGAGCAAGCCGACCTCACAGGTCGAACAGATGAGCACGTTTGTCTGGGAGGGAAC
CGACAAGCGTGGCGTGAAGATGAAGGGTGAACAGACTTCCAAGAACCAAAACTTGCTACGTGCGGAGCTACGACGCCAGG
GGATCACGCCGACAGTAGTGAAAGCGAAACCCAAGCCTTTATTTGGCGCTGCTGGAAAGAAGATTACAGCGAAGGATATT
TCATTCTTCAGCCGGCAAATGGCAACCATGATGAAATCGGGCGTGCCTATCGTCGGCGCACTTGAAATCATTGGCAGTGG
CCAGAAAAATCCGCGTATGCGGAATATGGTCGGCCAGATCCGCACTGACATCGAGGGAGGCTCGTCGCTACACGAGGCGG
TAAGCAAGCATCCCGTTCAGTTCGACGAGTTGTACAGGAATTTGGTCAAGGCAGGCGAAGGCGCCGGCGTCCTTGAAACA
GTGCTCGACACAATTGCAAGCTACAAAGAAAACATCGAAGCGTTGAAAGGCAAAATCAAGAAGGCGCTGTTCTACCCGGC
GATGGTAGTCGCTGTGGCGCTACTGGTCAGTGCGATCTTGTTGATCTTTGTCGTGCCGCAATTCGAAGATGTCTTCAAGG
GCTTCGGCGCGGAACTTCCGGCATTTACACAGATGATCGTCAACATGTCGCGTTTCATGGTGTCGTGGTGGTGGTTGATC
CTGTTCGTTGCCATCGGTGCCGTCGTGGGCTTCATCTTTGCCTACAAACGCTCACCTGCAATGCAGCACGGCATGGATCG
CCTGATCCTCAAAGTGCCGATCATTGGGCAGGTCATGCACAACAGCTCTATCGCGCGTTTTGCCCGCACCACGGCCGTGA
CATTTAAAGCAGGCGTACCTTTAGTTGAGGCACTCGGCATCGTGGCTGGCGCTACAGGCAACTCTGTCTATGAGAAAGCG
GTACTTCGCATGCGCGAAGACGTATCTGTGGGATATCCCGTCAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAGGCTGGTGCGTTAGACGCGATGCTGTTCAAGGTGGCAGAGTACTTCGAGC
AGGAAGTCAACAATGCGGTCGACGCACTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGT
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.518	95.215	0.51
pilC	Pseudomonas stutzeri DSM 10701	53.015	95.215	0.505
pilC	Acinetobacter baumannii D1279779	51.238	96.651	0.495
pilC	Acinetobacter baylyi ADP1	50.743	96.651	0.49
pilG	Neisseria gonorrhoeae MS11	44.389	95.933	0.426
pilG	Neisseria meningitidis 44/76-A	43.89	95.933	0.421
pilC	Vibrio cholerae strain A1552	40.741	96.89	0.395
pilC	Vibrio campbellii strain DS40M4	39.401	95.933	0.378
pilC	Thermus thermophilus HB27	37.717	96.411	0.364