Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   BDT_RS18615 Genome accession   NC_019567
Coordinates   3923203..3924306 (+) Length   367 a.a.
NCBI ID   WP_041578149.1    Uniprot ID   -
Organism   Bdellovibrio bacteriovorus str. Tiberius     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3918203..3929306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDT_RS18595 (Bdt_3716) rpmA 3918798..3919058 (-) 261 WP_011166148.1 50S ribosomal protein L27 -
  BDT_RS18600 (Bdt_3717) rplU 3919088..3919651 (-) 564 WP_015092788.1 50S ribosomal protein L21 -
  BDT_RS18605 (Bdt_3718) - 3919859..3921460 (-) 1602 WP_015092789.1 hypothetical protein -
  BDT_RS18610 (Bdt_3719) - 3921538..3923055 (-) 1518 WP_015092790.1 Rne/Rng family ribonuclease -
  BDT_RS18615 (Bdt_3721) pilT 3923203..3924306 (+) 1104 WP_041578149.1 type IV pilus twitching motility protein PilT Machinery gene
  BDT_RS18620 (Bdt_3722) - 3924308..3924685 (-) 378 WP_235046198.1 hypothetical protein -
  BDT_RS18625 (Bdt_3723) deoC 3924745..3925407 (+) 663 WP_015092794.1 deoxyribose-phosphate aldolase -
  BDT_RS18630 (Bdt_3724) - 3925407..3926726 (+) 1320 WP_015092795.1 thymidine phosphorylase -
  BDT_RS18635 (Bdt_3725) - 3926754..3927569 (+) 816 WP_080602456.1 purine-nucleoside phosphorylase -
  BDT_RS18640 (Bdt_3726) - 3927714..3928943 (+) 1230 WP_041578153.1 S8 family peptidase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39803.97 Da        Isoelectric Point: 7.9844

>NTDB_id=54608 BDT_RS18615 WP_041578149.1 3923203..3924306(+) (pilT) [Bdellovibrio bacteriovorus str. Tiberius]
MATIDELFKLMVEQGASDLHITSGAAPYLRLHGNMVPLNYRELTNQDVQGLLFEILSEKQKKAFVEKWELDFAYTLPGVG
RFRCNIFMQRKGLGAVMRIIPEKIKTAQELGLPPAVMDMIDCDRGLILVTGPTGSGKSTTLAAMIHQINMTREAHIITVE
DPIEFVHPNLKSLVNQREVGSHTKSFANALKAALREDPDILLVGELRDLETISLALTAAETGHIVFGTLHTNSAAKTIDR
IIDVFPAGQQQQIRTMLAESLRGVVAQTLFSRADGQGRVAAYEIMRNTKAISNLVREGKVHQIPSAMQTGATQGMVLFEK
YIEDLVRKGKVSAADAKTFLGQAGGGDTSVQTGMGGAPAGGPRTKVG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=54608 BDT_RS18615 WP_041578149.1 3923203..3924306(+) (pilT) [Bdellovibrio bacteriovorus str. Tiberius]
ATGGCAACAATTGATGAATTGTTCAAACTCATGGTGGAACAAGGTGCCTCCGACTTGCATATCACAAGTGGAGCCGCCCC
TTATTTGCGCCTGCATGGAAACATGGTTCCATTGAACTATCGTGAGCTCACCAATCAGGACGTGCAGGGACTGCTTTTTG
AAATTCTCTCTGAAAAGCAAAAGAAAGCTTTCGTTGAAAAGTGGGAGCTGGATTTCGCCTACACTTTGCCAGGTGTCGGT
CGTTTCCGTTGCAATATCTTTATGCAGCGTAAAGGCCTTGGCGCCGTTATGCGTATCATTCCGGAAAAAATCAAAACTGC
ACAGGAACTGGGACTGCCTCCGGCCGTGATGGACATGATCGATTGCGATCGTGGTCTGATTCTGGTCACCGGTCCGACCG
GTTCTGGTAAATCCACAACCTTGGCGGCGATGATTCACCAAATTAACATGACCCGCGAAGCCCACATCATCACCGTGGAA
GACCCAATCGAGTTCGTTCACCCGAATTTGAAGTCCCTGGTCAATCAGCGTGAGGTGGGAAGCCACACCAAAAGTTTCGC
CAACGCCCTGAAAGCGGCTCTGCGTGAAGATCCGGACATCCTGCTGGTGGGGGAGCTTCGTGACTTGGAAACTATTTCTT
TGGCACTGACCGCGGCAGAAACAGGTCATATCGTTTTCGGAACCCTGCACACCAACAGTGCGGCGAAAACCATCGATCGT
ATCATTGACGTATTCCCTGCCGGTCAACAGCAACAGATCCGCACGATGCTGGCGGAATCCCTGCGTGGAGTTGTCGCCCA
GACACTGTTCTCCCGCGCGGATGGACAAGGTCGCGTAGCGGCTTACGAGATCATGAGAAACACCAAAGCCATCTCGAACT
TGGTTCGTGAAGGTAAAGTCCACCAGATCCCATCTGCCATGCAGACCGGTGCCACTCAAGGTATGGTTCTGTTTGAAAAG
TACATTGAAGATCTGGTTCGTAAGGGTAAAGTTTCCGCAGCCGACGCCAAGACCTTCCTGGGTCAGGCCGGTGGTGGCGA
CACCAGCGTGCAGACCGGAATGGGTGGCGCACCTGCCGGCGGTCCGCGCACCAAAGTGGGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.22

100

0.515
  pilT Acinetobacter nosocomialis M2

55.224

91.281

0.504
  pilT Acinetobacter baumannii D1279779

55.224

91.281

0.504
  pilT Acinetobacter baumannii strain A118

55.224

91.281

0.504
  pilT Pseudomonas aeruginosa PAK

55.09

91.008

0.501
  pilT Vibrio cholerae strain A1552

54.627

91.281

0.499
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.627

91.281

0.499
  pilT Acinetobacter baylyi ADP1

54.79

91.008

0.499
  pilT Pseudomonas stutzeri DSM 10701

54.491

91.008

0.496
  pilT Legionella pneumophila strain ERS1305867

54.407

89.646

0.488
  pilT Legionella pneumophila strain Lp02

54.407

89.646

0.488
  pilT Neisseria meningitidis 8013

51.198

91.008

0.466
  pilT Neisseria gonorrhoeae MS11

51.198

91.008

0.466
  pilU Pseudomonas stutzeri DSM 10701

39.782

100

0.398
  pilU Acinetobacter baylyi ADP1

41.018

91.008

0.373
  pilU Vibrio cholerae strain A1552

41.104

88.828

0.365

Multiple sequence alignment