Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JZM60_RS06350 Genome accession   NZ_CP071382
Coordinates   1347879..1348949 (+) Length   356 a.a.
NCBI ID   WP_207164660.1    Uniprot ID   -
Organism   Geobacter benzoatilyticus strain Jerry-YX     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1342879..1353949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM60_RS06330 (JZM60_06330) pdxA 1342950..1343966 (+) 1017 WP_207164656.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  JZM60_RS06335 (JZM60_06335) - 1343963..1344931 (+) 969 WP_207164657.1 transglycosylase domain-containing protein -
  JZM60_RS06340 (JZM60_06340) - 1345058..1346062 (-) 1005 WP_207164658.1 hypothetical protein -
  JZM60_RS06345 (JZM60_06345) - 1346244..1347866 (+) 1623 WP_207164659.1 ATPase, T2SS/T4P/T4SS family -
  JZM60_RS06350 (JZM60_06350) pilT 1347879..1348949 (+) 1071 WP_207164660.1 type IV pilus twitching motility protein PilT Machinery gene
  JZM60_RS06360 (JZM60_06360) - 1349153..1349974 (-) 822 WP_207164661.1 helix-turn-helix transcriptional regulator -
  JZM60_RS06365 (JZM60_06365) - 1350097..1350294 (+) 198 WP_207164662.1 helix-turn-helix transcriptional regulator -
  JZM60_RS06370 (JZM60_06370) - 1350640..1351482 (+) 843 WP_420907830.1 hypothetical protein -
  JZM60_RS06375 (JZM60_06375) - 1351588..1352241 (+) 654 WP_207164664.1 hypothetical protein -
  JZM60_RS06380 (JZM60_06380) - 1352535..1352840 (+) 306 WP_207164665.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39756.97 Da        Isoelectric Point: 7.3020

>NTDB_id=545119 JZM60_RS06350 WP_207164660.1 1347879..1348949(+) (pilT) [Geobacter benzoatilyticus strain Jerry-YX]
MARIDALFKMLKEQGASDLHLSSGSPPIFRLHGEMARQNFKPLTHEELTAILYEILTEKQKADFQERHDLDFAYAIPGLA
RFRGNYMMTHRGIAAVFRIIPSKILSADDLSLPEGVRRMTQFKKGLVLVTGPTGSGKSTTLAAMIDLINATRKEHILTLE
DPLEFIHENKMSLLNQRQIGEHSMTFTAALRAALREDPDVILVGEMRDLETIGLAMSAAETGHLVFGTLHTNSASKTIDR
IIDVFPTDQQEQTRAMLSESLKGVVCQQLLKTADGKGRVAALEIMLGTPAIGNLIREGKTFQIPSIIQTAKRDGMQLMDQ
HLLDLFKTKRITAEEAYRCAQDKKQFEQYLAEKPAQ

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=545119 JZM60_RS06350 WP_207164660.1 1347879..1348949(+) (pilT) [Geobacter benzoatilyticus strain Jerry-YX]
ATGGCACGCATAGACGCACTTTTTAAAATGCTCAAGGAACAGGGCGCTTCCGACCTCCACCTCTCCTCCGGGTCCCCTCC
CATCTTCCGGTTGCATGGAGAGATGGCCCGGCAGAACTTCAAGCCCCTCACACATGAGGAACTGACAGCCATACTTTACG
AGATTCTCACCGAGAAGCAGAAGGCCGACTTCCAGGAACGCCACGATCTCGACTTCGCCTACGCCATCCCCGGCCTTGCC
CGGTTCCGGGGGAACTACATGATGACCCACCGGGGGATCGCCGCGGTCTTCCGGATCATTCCCAGCAAGATCCTCTCGGC
CGATGATCTCAGCCTGCCCGAAGGGGTCCGGCGGATGACCCAGTTCAAGAAGGGGCTCGTGCTGGTTACCGGCCCAACCG
GCTCGGGGAAATCCACGACCCTGGCCGCCATGATCGACCTCATCAATGCCACCCGCAAGGAGCACATCCTCACCCTGGAG
GACCCCCTCGAATTCATCCACGAAAACAAGATGTCGCTCCTTAACCAGCGGCAGATCGGCGAGCACTCCATGACCTTCAC
CGCCGCCCTCCGGGCCGCCCTGCGGGAAGACCCCGACGTCATCCTCGTCGGCGAGATGCGGGACCTGGAGACCATCGGCC
TTGCCATGAGCGCCGCCGAGACCGGCCACCTGGTTTTCGGGACGCTCCACACCAACTCGGCGTCCAAGACCATCGACCGG
ATCATCGACGTCTTCCCCACCGACCAGCAGGAGCAGACCCGGGCCATGCTCTCCGAATCCCTCAAGGGGGTCGTCTGCCA
GCAGCTCCTGAAAACCGCCGACGGCAAGGGACGGGTGGCGGCCCTGGAGATCATGCTCGGCACCCCGGCCATCGGCAACC
TGATCCGTGAGGGAAAGACCTTCCAGATCCCCTCCATCATCCAGACCGCCAAGCGTGACGGGATGCAGCTCATGGACCAG
CATCTGCTGGACCTCTTCAAGACCAAGCGGATTACCGCCGAAGAAGCCTACCGCTGCGCCCAGGACAAGAAGCAGTTCGA
GCAGTACCTGGCGGAGAAGCCGGCGCAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Legionella pneumophila strain Lp02

57.402

92.978

0.534
  pilT Legionella pneumophila strain ERS1305867

57.402

92.978

0.534
  pilT Pseudomonas stutzeri DSM 10701

55.102

96.348

0.531
  pilT Pseudomonas aeruginosa PAK

54.81

96.348

0.528
  pilT Acinetobacter baylyi ADP1

54.227

96.348

0.522
  pilT Acinetobacter baumannii strain A118

53.644

96.348

0.517
  pilT Acinetobacter nosocomialis M2

53.644

96.348

0.517
  pilT Acinetobacter baumannii D1279779

53.644

96.348

0.517
  pilT Neisseria gonorrhoeae MS11

53.509

96.067

0.514
  pilT Neisseria meningitidis 8013

55.015

92.416

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.895

96.348

0.5
  pilT Vibrio cholerae strain A1552

52.41

93.258

0.489
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

52.41

93.258

0.489
  pilU Pseudomonas stutzeri DSM 10701

39.458

93.258

0.368
  pilU Vibrio cholerae strain A1552

39.692

91.292

0.362
  pilU Acinetobacter baylyi ADP1

38.507

94.101

0.362