Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LLZ83_RS09535 Genome accession   NZ_CP086130
Coordinates   1867022..1868290 (+) Length   422 a.a.
NCBI ID   WP_000774761.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862022..1873290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS09495 (LLZ83_09490) prmA 1862418..1863371 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  LLZ83_RS09500 (LLZ83_09495) - 1863368..1863832 (-) 465 WP_306341185.1 MepB family protein -
  LLZ83_RS09505 (LLZ83_09500) - 1863950..1864666 (+) 717 WP_000859572.1 MerR family transcriptional regulator -
  LLZ83_RS09510 (LLZ83_09505) - 1864705..1865175 (-) 471 WP_000631752.1 GNAT family N-acetyltransferase -
  LLZ83_RS09515 (LLZ83_09510) - 1865147..1865605 (-) 459 WP_000350744.1 NUDIX hydrolase -
  LLZ83_RS09520 (LLZ83_09515) - 1865741..1866211 (-) 471 WP_001051348.1 DUF3013 family protein -
  LLZ83_RS09530 (LLZ83_09525) - 1866538..1867029 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  LLZ83_RS09535 (LLZ83_09530) rarA 1867022..1868290 (+) 1269 WP_000774761.1 replication-associated recombination protein A Machinery gene
  LLZ83_RS09545 (LLZ83_09540) - 1868745..1869866 (-) 1122 WP_000257254.1 site-specific integrase -
  LLZ83_RS09550 (LLZ83_09545) - 1869916..1870242 (-) 327 WP_001188032.1 DUF771 domain-containing protein -
  LLZ83_RS09555 (LLZ83_09550) - 1870435..1871067 (-) 633 WP_000578744.1 hypothetical protein -
  LLZ83_RS09560 (LLZ83_09555) - 1871143..1871685 (-) 543 WP_000935941.1 hypothetical protein -
  LLZ83_RS10535 - 1871908..1872036 (-) 129 Protein_1809 cell wall anchor protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46626.04 Da        Isoelectric Point: 6.5117

>NTDB_id=540692 LLZ83_RS09535 WP_000774761.1 1867022..1868290(+) (rarA) [Streptococcus agalactiae strain MIN-180]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=540692 LLZ83_RS09535 WP_000774761.1 1867022..1868290(+) (rarA) [Streptococcus agalactiae strain MIN-180]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588