Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JNE32_RS19080 Genome accession   NZ_CP068982
Coordinates   3604438..3605031 (+) Length   197 a.a.
NCBI ID   WP_038427933.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599438..3610031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS19050 (JNE32_18955) psmA 3599693..3600028 (+) 336 WP_014480966.1 SMR family transporter -
  JNE32_RS19055 (JNE32_18960) psmB 3600028..3600348 (+) 321 WP_003228222.1 QacE family quaternary ammonium compound efflux SMR transporter -
  JNE32_RS19060 (JNE32_18965) yvdQ 3600384..3600896 (-) 513 WP_003243249.1 DUF3231 family protein -
  JNE32_RS19065 (JNE32_18970) cotNP 3601148..3602491 (-) 1344 WP_029725961.1 FAD-binding oxidoreductase -
  JNE32_RS19070 (JNE32_18975) cotR 3602847..3603809 (+) 963 WP_029725962.1 sporulation hydrolase CotR -
  JNE32_RS19080 (JNE32_18985) clpP 3604438..3605031 (+) 594 WP_038427933.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JNE32_RS19085 (JNE32_18990) pgmB 3605093..3605767 (-) 675 WP_038427934.1 beta-phosphoglucomutase -
  JNE32_RS19090 (JNE32_18995) malL 3605764..3607449 (-) 1686 WP_038427935.1 oligo-1,6-glucosidase -
  JNE32_RS19095 (JNE32_19000) mdxK 3607442..3609716 (-) 2275 Protein_3714 maltose phosphorylase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21667.97 Da        Isoelectric Point: 4.9349

>NTDB_id=531759 JNE32_RS19080 WP_038427933.1 3604438..3605031(+) (clpP) [Bacillus subtilis strain pb2441]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALDYGLIDKILTHTEDKK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=531759 JNE32_RS19080 WP_038427933.1 3604438..3605031(+) (clpP) [Bacillus subtilis strain pb2441]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTATATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGATTACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

95.431

0.65
  clpP Streptococcus thermophilus LMG 18311

57.653

99.492

0.574
  clpP Streptococcus thermophilus LMD-9

57.653

99.492

0.574
  clpP Streptococcus pneumoniae D39

57.292

97.462

0.558
  clpP Streptococcus pneumoniae Rx1

57.292

97.462

0.558
  clpP Streptococcus pneumoniae R6

57.292

97.462

0.558
  clpP Streptococcus pneumoniae TIGR4

57.292

97.462

0.558
  clpP Streptococcus pyogenes JRS4

56.122

99.492

0.558
  clpP Streptococcus pyogenes MGAS315

56.122

99.492

0.558
  clpP Lactococcus lactis subsp. cremoris KW2

57.368

96.447

0.553
  clpP Streptococcus mutans UA159

54.822

100

0.548
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.263

96.447

0.533