Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   JH310_RS05270 Genome accession   NZ_CP066936
Coordinates   1239153..1239593 (+) Length   146 a.a.
NCBI ID   WP_011038214.1    Uniprot ID   Q8P671
Organism   Xanthomonas campestris pv. campestris strain 10090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1237570..1248660 1239153..1239593 within 0


Gene organization within MGE regions


Location: 1237570..1248660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH310_RS05265 (JH310_05245) pilC 1237570..1238826 (-) 1257 WP_011038215.1 type II secretion system F family protein Machinery gene
  JH310_RS05270 (JH310_05250) pilE 1239153..1239593 (+) 441 WP_011038214.1 pilin Machinery gene
  JH310_RS05275 (JH310_05255) - 1239673..1240107 (+) 435 WP_011038213.1 pilin -
  JH310_RS05280 (JH310_05260) pilB 1240172..1241905 (+) 1734 WP_011038212.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH310_RS05290 (JH310_05270) pilR 1242324..1243718 (-) 1395 WP_012437607.1 sigma-54 dependent transcriptional regulator Regulator
  JH310_RS05295 (JH310_05275) - 1243927..1245537 (-) 1611 WP_012437608.1 HAMP domain-containing sensor histidine kinase -
  JH310_RS05300 (JH310_05280) sucC 1245771..1246940 (+) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  JH310_RS05305 (JH310_05285) sucD 1246965..1247840 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH310_RS05310 (JH310_05290) - 1247944..1248354 (+) 411 WP_029628876.1 DNA-binding protein -
  JH310_RS05315 (JH310_05295) - 1248358..1248660 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14797.93 Da        Isoelectric Point: 9.0090

>NTDB_id=523390 JH310_RS05270 WP_011038214.1 1239153..1239593(+) (pilE) [Xanthomonas campestris pv. campestris strain 10090]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPATNAAAGLEAAANIKG
KYVTSVTVGAGGIITAAFNTANAKLSGKNLVLTPTDNNGSISWGCTNGTTIDQKYLPTSCRTAAAP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=523390 JH310_RS05270 WP_011038214.1 1239153..1239593(+) (pilE) [Xanthomonas campestris pv. campestris strain 10090]
ATGAAAAAGCAAAATGGTTTTACACTGATCGAACTCATGATCGTCGTTGCGATCATCGCTATTCTGGCCGCTATCGCTTT
GCCGGCGTACCAGGATTACCTCGCTCGTTCGCAGGTTTCGGAAGGCTTGTCTTTGGCGTCGGGTGCAAAGACAGCTGTCG
CTGAAACTTATGCTAACACCGGTGCCTTCCCGGCGACCAATGCCGCCGCTGGCCTTGAGGCTGCTGCGAACATCAAGGGT
AAGTACGTTACGTCTGTGACGGTGGGGGCGGGTGGGATCATCACCGCGGCATTCAATACTGCTAATGCAAAGTTGAGTGG
CAAGAATCTGGTCCTGACCCCGACTGACAATAACGGTTCGATCAGCTGGGGGTGCACCAACGGCACCACGATTGATCAGA
AGTATCTGCCGACCTCTTGCCGCACTGCGGCGGCTCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P671

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

46.875

100

0.514
  pilE Neisseria gonorrhoeae strain FA1090

46.541

100

0.507
  pilA2 Legionella pneumophila str. Paris

52.857

95.89

0.507
  pilA2 Legionella pneumophila strain ERS1305867

52.143

95.89

0.5
  pilA/pilA1 Eikenella corrodens VA1

46.452

100

0.493
  comP Acinetobacter baylyi ADP1

48

100

0.493
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.5

100

0.473
  pilA Ralstonia pseudosolanacearum GMI1000

40.244

100

0.452
  pilA Acinetobacter baumannii strain A118

41.333

100

0.425
  pilA Pseudomonas aeruginosa PAK

40.789

100

0.425
  pilA Vibrio campbellii strain DS40M4

40.268

100

0.411
  pilA Vibrio cholerae C6706

38.411

100

0.397
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.411

100

0.397
  pilA Vibrio cholerae strain A1552

38.411

100

0.397
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.288

95.205

0.384
  pilA Vibrio parahaemolyticus RIMD 2210633

42.4

85.616

0.363