Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   JGY88_RS00170 Genome accession   NZ_CP066721
Coordinates   44686..46035 (-) Length   449 a.a.
NCBI ID   WP_225486675.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39686..51035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS00150 (JGY88_00150) - 41298..41801 (-) 504 WP_225486671.1 DUF1643 domain-containing protein -
  JGY88_RS00155 (JGY88_00155) - 41818..42129 (-) 312 WP_225486672.1 DUF960 family protein -
  JGY88_RS00160 (JGY88_00160) - 42223..42564 (-) 342 WP_225486673.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JGY88_RS00165 (JGY88_00165) ccrB 43039..44664 (-) 1626 WP_225486674.1 cassette chromosome recombinase CcrB Machinery gene
  JGY88_RS00170 (JGY88_00170) ccrA 44686..46035 (-) 1350 WP_225486675.1 cassette chromosome recombinase CcrA Machinery gene
  JGY88_RS00175 (JGY88_00175) - 46206..46469 (-) 264 WP_047505043.1 hypothetical protein -
  JGY88_RS00180 (JGY88_00180) cch1 46535..48325 (-) 1791 WP_069821206.1 cassette chromosome replicative helicase -
  JGY88_RS00185 (JGY88_00185) ssb 48325..48618 (-) 294 WP_002511823.1 cassette chromosome ssDNA-binding protein -
  JGY88_RS00190 (JGY88_00190) - 48798..49793 (-) 996 WP_002511822.1 hypothetical protein -
  JGY88_RS00195 (JGY88_00195) - 50340..50639 (-) 300 WP_225486676.1 TetR-like C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52524.39 Da        Isoelectric Point: 10.1566

>NTDB_id=522126 JGY88_RS00170 WP_225486675.1 44686..46035(-) (ccrA) [Staphylococcus xylosus strain 2.1523]
MKQAIGYLRQSTLKQQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVSNGIKEKARQGKLITTHAPFGYHYK
RGTFTINKNESPTVIAVFNYYLQGNGYKKITQFLEEDNKLLNRKPYQVRNIIMNPNYCGRVINKYGQYDNMFPSIVSTNM
YEQAQALRSQKQIKRTPSDNQLKQKIKCPYCGSKLTNMTIRKGTHSLRYYVCPRNMNESRFVCDFKGINAQELETSVLTT
CQDFFQNQQLYSKINQTIQKQLKNQRDIETKNTLNHEQLIEKLAKGKIDAETFREQTQLLRQQSKPISSINAYQIKRTFQ
NVIKQRFTLNMLYPYIDEIHITKKKILVGIYFKNEPLNIINQTTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=522126 JGY88_RS00170 WP_225486675.1 44686..46035(-) (ccrA) [Staphylococcus xylosus strain 2.1523]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAACAACAATCACTCTCAGCCCAGAAACAAACCATCAAGGC
ATTAGCCGAAAAGCATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGCCAAAAATATCATGTTCATATCTTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTTAAACTTAATATTTTCATCAGCTTGGCCGAATTAGAATCTGATAATATTGGCGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCGCGTCAGGGTAAATTGATAACTACACACGCCCCCTTTGGTTACCACTACAAA
CGTGGTACATTCACGATAAATAAGAATGAATCACCAACGGTAATTGCCGTATTCAATTACTATCTTCAAGGTAATGGCTA
TAAAAAAATTACACAGTTCTTAGAAGAAGATAACAAACTACTCAACCGGAAACCTTATCAAGTACGTAATATTATTATGA
ATCCCAATTACTGTGGTCGTGTTATCAATAAATATGGACAATATGACAACATGTTTCCGTCTATTGTTTCTACAAATATG
TACGAACAAGCGCAAGCTCTACGATCGCAAAAACAAATCAAACGAACACCTTCAGACAATCAACTCAAACAAAAAATCAA
ATGCCCCTACTGTGGATCTAAACTTACCAATATGACCATTAGAAAAGGGACGCATTCATTACGTTACTATGTCTGCCCAA
GAAATATGAATGAATCACGTTTTGTTTGTGACTTCAAAGGCATCAATGCACAAGAATTAGAAACAAGTGTTTTAACGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTGTACTCAAAAATCAACCAAACAATTCAAAAACAACTCAAAAACCAAAGAGA
CATAGAAACCAAAAATACACTAAACCATGAACAGCTGATAGAAAAATTAGCCAAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATTATTACGTCAACAATCTAAACCTATATCGTCAATCAATGCATATCAAATTAAAAGGACTTTTCAA
AACGTCATTAAACAACGTTTCACGTTAAACATGTTATACCCTTATATTGATGAAATTCATATCACAAAAAAGAAAATACT
TGTTGGCATTTATTTCAAAAATGAACCTTTAAACATAATCAATCAAACTACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

83.964

100

0.84
  ccrA Staphylococcus aureus N315

76.392

100

0.764