Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LPO_RS09945 Genome accession   NC_018139
Coordinates   2187336..2188370 (-) Length   344 a.a.
NCBI ID   WP_010947729.1    Uniprot ID   Q5ZTZ5
Organism   Legionella pneumophila subsp. pneumophila     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2182336..2193370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS09925 (LPO_2108) rpoZ 2184245..2184448 (-) 204 WP_011214258.1 DNA-directed RNA polymerase subunit omega -
  LPO_RS09930 (LPO_2109) gmk 2184499..2185128 (-) 630 WP_014842057.1 guanylate kinase -
  LPO_RS09935 (LPO_2110) - 2185134..2186000 (-) 867 WP_014842058.1 YicC/YloC family endoribonuclease -
  LPO_RS09940 (LPO_2111) rph 2186301..2187008 (+) 708 WP_010947728.1 ribonuclease PH -
  LPO_RS09945 (LPO_2112) pilT 2187336..2188370 (-) 1035 WP_010947729.1 type IV pilus twitching motility protein PilT Machinery gene
  LPO_RS09950 (LPO_2113) - 2188534..2189229 (+) 696 WP_014842059.1 YggS family pyridoxal phosphate-dependent enzyme -
  LPO_RS09955 (LPO_2114) proC 2189226..2190014 (+) 789 WP_014842060.1 pyrroline-5-carboxylate reductase -
  LPO_RS09960 (LPO_2115) - 2190360..2190935 (+) 576 WP_011215977.1 YggT family protein -
  LPO_RS09965 (LPO_2117) - 2190995..2191597 (+) 603 WP_014842061.1 DUF2845 domain-containing protein -
  LPO_RS09970 (LPO_2118) - 2191611..2191892 (+) 282 WP_010947734.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38386.27 Da        Isoelectric Point: 7.0290

>NTDB_id=52142 LPO_RS09945 WP_010947729.1 2187336..2188370(-) (pilT) [Legionella pneumophila subsp. pneumophila]
MDIAELLAFSVKNKSSDLHISAGMPPMIRVDGDLRKINLPPLEHKDVIKIIYDIMNDRQRKEYEEFFETDFSFEIANLAR
FRVNAFNQSRGAAAVFRTIPSEILSMEDLGLPPIFKEMASFSRGLVLVTGPTGSGKSTTLAAVIDYINSSRYEHILTVED
PIEFVHQSKKCLVNQREVHKDTLSFNAALRSALREDPDIILVGELRDLETIRLAMTAAETGHLVFGTLHTNSATKTINRI
IDVFPAEEKSMVRSMLSESLQAVVAQSLLKKNKGGRVAALEIMMCTGAIRNLIREDKIAQMYSSIQTGQAKGMQTLDQHL
TELVNKNIISKHTAHEAALNKSLF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=52142 LPO_RS09945 WP_010947729.1 2187336..2188370(-) (pilT) [Legionella pneumophila subsp. pneumophila]
ATGGATATCGCGGAATTATTGGCATTTTCAGTTAAAAACAAATCATCAGATTTGCATATTTCAGCTGGCATGCCTCCTAT
GATTCGTGTTGATGGTGATTTACGCAAAATTAATTTACCTCCATTAGAGCATAAAGACGTCATTAAGATTATTTATGACA
TAATGAATGACAGGCAAAGAAAAGAATATGAAGAATTTTTTGAAACAGATTTTTCCTTTGAAATAGCCAATCTGGCACGG
TTCAGGGTTAATGCTTTCAATCAATCGCGCGGTGCTGCTGCTGTTTTCAGAACTATTCCTTCTGAAATTCTTAGCATGGA
AGATTTAGGATTGCCCCCAATTTTTAAAGAAATGGCCAGTTTTTCCAGGGGTCTGGTTCTGGTTACTGGCCCAACTGGAT
CAGGAAAAAGTACCACGCTTGCAGCAGTCATCGATTATATTAATTCAAGTCGTTATGAGCATATTTTGACAGTTGAAGAT
CCTATTGAGTTTGTTCATCAAAGCAAAAAATGTCTGGTCAACCAACGCGAAGTACACAAAGACACATTGAGCTTTAATGC
CGCTTTGAGATCGGCGTTACGTGAAGATCCGGATATTATATTGGTGGGTGAATTACGCGATTTGGAAACTATACGCTTGG
CAATGACTGCAGCAGAAACCGGGCATTTGGTTTTTGGAACATTGCATACCAATTCTGCAACAAAAACAATAAACAGGATA
ATTGATGTATTTCCCGCTGAAGAAAAATCGATGGTACGGTCCATGCTTTCTGAATCATTGCAAGCTGTCGTTGCTCAAAG
TTTATTAAAAAAGAATAAAGGTGGTCGGGTTGCGGCGCTTGAAATTATGATGTGTACGGGGGCTATTCGTAATTTAATTC
GTGAGGATAAGATAGCGCAAATGTATTCGTCAATTCAAACTGGTCAAGCCAAAGGAATGCAAACATTGGACCAACATTTG
ACTGAATTGGTTAATAAAAATATTATTTCGAAACACACCGCTCATGAGGCTGCCCTGAACAAGTCATTATTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZTZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Legionella pneumophila strain ERS1305867

100

100

1
  pilT Legionella pneumophila strain Lp02

100

100

1
  pilT Acinetobacter baumannii D1279779

75.581

100

0.756
  pilT Acinetobacter baumannii strain A118

75.581

100

0.756
  pilT Acinetobacter nosocomialis M2

75.581

100

0.756
  pilT Acinetobacter baylyi ADP1

73.256

100

0.733
  pilT Pseudomonas aeruginosa PAK

74.556

98.256

0.733
  pilT Pseudomonas stutzeri DSM 10701

74.26

98.256

0.73
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

67.477

95.64

0.645
  pilT Vibrio cholerae strain A1552

67.477

95.64

0.645
  pilT Neisseria meningitidis 8013

64.809

99.128

0.642
  pilT Neisseria gonorrhoeae MS11

64.516

99.128

0.64
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.275

100

0.494
  pilU Vibrio cholerae strain A1552

42.773

98.547

0.422
  pilU Pseudomonas stutzeri DSM 10701

41.791

97.384

0.407
  pilU Acinetobacter baylyi ADP1

40.361

96.512

0.39

Multiple sequence alignment