Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | DGO_RS11715 | Genome accession | NC_017790 |
| Coordinates | 2468834..2470069 (+) | Length | 411 a.a. |
| NCBI ID | WP_043802203.1 | Uniprot ID | - |
| Organism | Deinococcus gobiensis I-0 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2463834..2475069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGO_RS11700 (DGo_CA2322) | pgeF | 2464636..2465379 (+) | 744 | WP_043802202.1 | peptidoglycan editing factor PgeF | - |
| DGO_RS11705 (DGo_CA2323) | - | 2465376..2465888 (+) | 513 | WP_014685733.1 | YqeG family HAD IIIA-type phosphatase | - |
| DGO_RS11710 (DGo_CA2324) | pilB | 2466045..2468708 (+) | 2664 | WP_014685734.1 | type II/IV secretion system protein | Machinery gene |
| DGO_RS11715 (DGo_CA2325) | pilT | 2468834..2470069 (+) | 1236 | WP_043802203.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DGO_RS11720 (DGo_CA2326) | - | 2470723..2472627 (+) | 1905 | WP_014685736.1 | CASTOR/POLLUX-related putative ion channel | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 44610.78 Da Isoelectric Point: 7.1465
>NTDB_id=50890 DGO_RS11715 WP_043802203.1 2468834..2470069(+) (pilT) [Deinococcus gobiensis I-0]
MSPADITDILRHAAETGASDVILTVGMPPQFKISGVYSSQNFEELTPPDTRKLMYSMMNERQQRTFEERRELDFSFALGE
KARFRVNTFMQRGYVGGVMRLIPTKIRSAQDMGLPQSVVDIASAPRGLVLVTGPTGSGKSTTLAAMIDHINSTKKLHIVT
IEDPIEFMHSHKQSIINQREVGADTLSFNDALRAALRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPESV
DRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRLDGQGRALAYELLIANPAVRALIREGKTYQLTSVMQTGSREGMVTM
DAFLANLYRRRVISYDAGLERAIDPKEYARLANDATANLGAAGQYAPPAPSAPAGGGYAQGAGLGRGDVGRGGLTQTSVP
AGDSKPPFGRR
MSPADITDILRHAAETGASDVILTVGMPPQFKISGVYSSQNFEELTPPDTRKLMYSMMNERQQRTFEERRELDFSFALGE
KARFRVNTFMQRGYVGGVMRLIPTKIRSAQDMGLPQSVVDIASAPRGLVLVTGPTGSGKSTTLAAMIDHINSTKKLHIVT
IEDPIEFMHSHKQSIINQREVGADTLSFNDALRAALRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPESV
DRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRLDGQGRALAYELLIANPAVRALIREGKTYQLTSVMQTGSREGMVTM
DAFLANLYRRRVISYDAGLERAIDPKEYARLANDATANLGAAGQYAPPAPSAPAGGGYAQGAGLGRGDVGRGGLTQTSVP
AGDSKPPFGRR
Nucleotide
Download Length: 1236 bp
>NTDB_id=50890 DGO_RS11715 WP_043802203.1 2468834..2470069(+) (pilT) [Deinococcus gobiensis I-0]
ATGAGCCCAGCCGACATCACCGACATCCTGCGCCACGCCGCCGAGACCGGGGCCTCCGACGTGATCCTCACGGTCGGGAT
GCCCCCGCAGTTCAAGATTTCCGGGGTCTACAGCAGCCAGAACTTCGAGGAACTGACGCCCCCCGACACCCGCAAACTGA
TGTACTCGATGATGAACGAGCGCCAGCAGCGGACCTTCGAGGAACGCCGCGAGCTGGACTTCTCGTTCGCGCTGGGCGAG
AAGGCCCGTTTCCGCGTGAACACCTTCATGCAGCGCGGCTACGTGGGCGGCGTCATGCGTCTCATTCCCACCAAGATCCG
CAGCGCGCAGGACATGGGGCTGCCGCAGTCGGTGGTGGACATCGCCAGCGCGCCGCGCGGCCTGGTCCTCGTGACCGGCC
CCACCGGCTCGGGCAAGAGCACCACGCTCGCGGCGATGATCGACCACATCAACAGCACCAAGAAGCTGCACATCGTGACC
ATCGAAGACCCCATCGAGTTCATGCACTCGCATAAACAGAGCATCATCAACCAGCGCGAGGTGGGGGCCGACACCCTGAG
CTTCAACGACGCCCTGCGCGCCGCGCTGCGTCAGGCCCCCGACGTGATCCTGGTGGGCGAAATGCGCGACTACGAGACCA
TCAAGGCCGCCGTGACCGCCGCCGAAACCGGGCACCTCGTGATGGGCACGCTGCACACCAACTCGGCCCCCGAATCGGTC
GACCGTATCGTGGACGTGTTCCCCGAGGAGCAGCAGGAGCAGATCCGCGTGCAGCTCGCCAACAACCTCGTGGCGGTCAT
GACCCAGCAGCTCCTGCCGCGCCTCGACGGCCAGGGGCGCGCCCTCGCCTACGAACTGCTGATCGCCAACCCGGCCGTGC
GGGCACTGATCCGCGAGGGCAAGACCTACCAGCTCACCAGCGTCATGCAGACCGGCTCGCGCGAGGGCATGGTCACCATG
GACGCCTTCCTGGCGAACCTGTACCGCCGCCGCGTCATCAGCTACGACGCGGGCCTGGAGCGCGCCATCGACCCCAAGGA
ATACGCCCGACTGGCGAACGACGCCACGGCCAACCTCGGGGCAGCGGGCCAGTACGCGCCGCCGGCCCCCAGCGCCCCGG
CGGGCGGCGGCTACGCCCAGGGCGCGGGGCTGGGACGCGGCGACGTGGGCCGGGGGGGCCTGACCCAGACCTCCGTTCCG
GCGGGCGACAGCAAGCCGCCGTTCGGGCGGCGGTAG
ATGAGCCCAGCCGACATCACCGACATCCTGCGCCACGCCGCCGAGACCGGGGCCTCCGACGTGATCCTCACGGTCGGGAT
GCCCCCGCAGTTCAAGATTTCCGGGGTCTACAGCAGCCAGAACTTCGAGGAACTGACGCCCCCCGACACCCGCAAACTGA
TGTACTCGATGATGAACGAGCGCCAGCAGCGGACCTTCGAGGAACGCCGCGAGCTGGACTTCTCGTTCGCGCTGGGCGAG
AAGGCCCGTTTCCGCGTGAACACCTTCATGCAGCGCGGCTACGTGGGCGGCGTCATGCGTCTCATTCCCACCAAGATCCG
CAGCGCGCAGGACATGGGGCTGCCGCAGTCGGTGGTGGACATCGCCAGCGCGCCGCGCGGCCTGGTCCTCGTGACCGGCC
CCACCGGCTCGGGCAAGAGCACCACGCTCGCGGCGATGATCGACCACATCAACAGCACCAAGAAGCTGCACATCGTGACC
ATCGAAGACCCCATCGAGTTCATGCACTCGCATAAACAGAGCATCATCAACCAGCGCGAGGTGGGGGCCGACACCCTGAG
CTTCAACGACGCCCTGCGCGCCGCGCTGCGTCAGGCCCCCGACGTGATCCTGGTGGGCGAAATGCGCGACTACGAGACCA
TCAAGGCCGCCGTGACCGCCGCCGAAACCGGGCACCTCGTGATGGGCACGCTGCACACCAACTCGGCCCCCGAATCGGTC
GACCGTATCGTGGACGTGTTCCCCGAGGAGCAGCAGGAGCAGATCCGCGTGCAGCTCGCCAACAACCTCGTGGCGGTCAT
GACCCAGCAGCTCCTGCCGCGCCTCGACGGCCAGGGGCGCGCCCTCGCCTACGAACTGCTGATCGCCAACCCGGCCGTGC
GGGCACTGATCCGCGAGGGCAAGACCTACCAGCTCACCAGCGTCATGCAGACCGGCTCGCGCGAGGGCATGGTCACCATG
GACGCCTTCCTGGCGAACCTGTACCGCCGCCGCGTCATCAGCTACGACGCGGGCCTGGAGCGCGCCATCGACCCCAAGGA
ATACGCCCGACTGGCGAACGACGCCACGGCCAACCTCGGGGCAGCGGGCCAGTACGCGCCGCCGGCCCCCAGCGCCCCGG
CGGGCGGCGGCTACGCCCAGGGCGCGGGGCTGGGACGCGGCGACGTGGGCCGGGGGGGCCTGACCCAGACCTCCGTTCCG
GCGGGCGACAGCAAGCCGCCGTTCGGGCGGCGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
79.644 |
95.62 |
0.762 |
| pilT | Neisseria meningitidis 8013 |
52.367 |
82.238 |
0.431 |
| pilT | Acinetobacter baumannii strain A118 |
51.453 |
83.698 |
0.431 |
| pilT | Acinetobacter nosocomialis M2 |
51.453 |
83.698 |
0.431 |
| pilT | Acinetobacter baumannii D1279779 |
51.453 |
83.698 |
0.431 |
| pilT | Neisseria gonorrhoeae MS11 |
51.929 |
81.995 |
0.426 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.872 |
83.698 |
0.426 |
| pilT | Legionella pneumophila strain Lp02 |
49.709 |
83.698 |
0.416 |
| pilT | Acinetobacter baylyi ADP1 |
49.709 |
83.698 |
0.416 |
| pilT | Pseudomonas aeruginosa PAK |
49.709 |
83.698 |
0.416 |
| pilT | Legionella pneumophila strain ERS1305867 |
49.709 |
83.698 |
0.416 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.24 |
80.049 |
0.394 |
| pilT | Vibrio cholerae strain A1552 |
49.24 |
80.049 |
0.394 |
| pilU | Pseudomonas stutzeri DSM 10701 |
45.21 |
81.265 |
0.367 |
| pilU | Acinetobacter baylyi ADP1 |
43.86 |
83.212 |
0.365 |