Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   F131LOC_RS17170 Genome accession   NZ_CP065030
Coordinates   3849781..3850797 (-) Length   338 a.a.
NCBI ID   WP_103971949.1    Uniprot ID   A0A855MF63
Organism   Pectobacterium versatile strain F131     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3844781..3855797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F131LOC_RS17155 (F131LOC_017155) nsrR 3844989..3845414 (-) 426 WP_010279087.1 nitric oxide-sensing transcriptional repressor NsrR -
  F131LOC_RS17160 (F131LOC_017160) - 3845758..3847329 (+) 1572 WP_103971948.1 methyl-accepting chemotaxis protein -
  F131LOC_RS17165 (F131LOC_017165) - 3847980..3849812 (+) 1833 WP_103942390.1 diguanylate cyclase -
  F131LOC_RS17170 (F131LOC_017170) pilT 3849781..3850797 (-) 1017 WP_103971949.1 type IV pilus twitching motility protein PilT Machinery gene
  F131LOC_RS17175 (F131LOC_017175) - 3850819..3851532 (+) 714 WP_103971950.1 YggS family pyridoxal phosphate-dependent enzyme -
  F131LOC_RS17180 (F131LOC_017180) proC 3851634..3852455 (+) 822 WP_103183183.1 pyrroline-5-carboxylate reductase -
  F131LOC_RS17185 (F131LOC_017185) - 3852505..3853059 (+) 555 WP_010295003.1 YggT family protein -
  F131LOC_RS17190 (F131LOC_017190) yggU 3853056..3853346 (+) 291 WP_010295005.1 DUF167 family protein YggU -
  F131LOC_RS17195 (F131LOC_017195) - 3853378..3853971 (+) 594 WP_103971951.1 XTP/dITP diphosphatase -
  F131LOC_RS17200 (F131LOC_017200) hemW 3853964..3855103 (+) 1140 WP_103971952.1 radical SAM family heme chaperone HemW -
  F131LOC_RS17205 (F131LOC_017205) - 3855335..3855598 (+) 264 WP_230857553.1 type II toxin-antitoxin system ParD family antitoxin -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36787.99 Da        Isoelectric Point: 6.6280

>NTDB_id=505934 F131LOC_RS17170 WP_103971949.1 3849781..3850797(-) (pilT) [Pectobacterium versatile strain F131]
MELDEWMARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTPDQVAQWCDAWLEPAQREQLRQAGQVDGALMLPDGQ
RLRVNVFRQREGLSAALRVIPSAQPSLDALHAPPVFSTLLEKPNGLLLITGATGSGKSTTLAAMLGALNDRCDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFSQALRAALREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQTLLPAAHGGRIALYEVLTATAAVSNLIREGKTHQIPGLIQTGAAAGMQTFEQS
YQQRCRDGLISHSCDLAV

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=505934 F131LOC_RS17170 WP_103971949.1 3849781..3850797(-) (pilT) [Pectobacterium versatile strain F131]
ATGGAGTTGGATGAGTGGATGGCGCGTAGTGTAAAACATAATGCCTCGGATCTGCACCTTTGTAGCGGTCACCCGCCGGT
GTTGCGTGTGGACGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGCCAGATCAGGTGGCACAATGGTGCGATG
CCTGGCTCGAACCGGCTCAGCGCGAGCAACTGCGGCAGGCTGGTCAGGTGGATGGGGCATTAATGCTGCCTGATGGGCAA
CGCCTGCGGGTTAACGTGTTTCGCCAGCGGGAAGGGCTGTCTGCGGCGCTGCGCGTTATTCCATCCGCTCAGCCTTCATT
GGACGCGCTACACGCGCCACCCGTTTTCTCGACGCTGCTGGAGAAACCGAACGGACTGCTCCTGATTACCGGTGCGACGG
GGAGCGGCAAATCCACAACGCTGGCGGCCATGCTTGGGGCGTTAAACGACCGCTGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGGGAGATCGGTGCGCACAGCGCGTCGTTTTC
GCAGGCATTACGGGCCGCATTGCGGGAGGATCCCGATGTCATTCTGCTGGGAGAACTACGCGATACGGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGCCATCTGGTGTTGTCGACGCTGCATACCCGTAGCGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCTGGTGAAGAAAAAGCCTATGTTCGCAGCCAGTTAGCCACCTGTTTGCAGGCGGTGGTGACGCA
AACACTTTTGCCTGCGGCACACGGTGGCCGCATTGCGCTTTATGAAGTACTGACCGCCACCGCGGCAGTCAGCAACCTGA
TTCGGGAAGGGAAAACGCACCAGATCCCCGGCCTGATTCAGACGGGAGCCGCTGCGGGAATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAGTTGCGACCTTGCCGTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855MF63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.515

97.633

0.503
  pilT Vibrio cholerae strain A1552

51.515

97.633

0.503
  pilT Neisseria meningitidis 8013

50.602

98.225

0.497
  pilT Neisseria gonorrhoeae MS11

50.301

98.225

0.494
  pilT Pseudomonas stutzeri DSM 10701

50.151

97.929

0.491
  pilT Pseudomonas aeruginosa PAK

49.849

97.929

0.488
  pilT Acinetobacter baylyi ADP1

49.547

97.929

0.485
  pilT Acinetobacter baumannii D1279779

49.245

97.929

0.482
  pilT Acinetobacter baumannii strain A118

49.245

97.929

0.482
  pilT Acinetobacter nosocomialis M2

49.245

97.929

0.482
  pilT Legionella pneumophila strain ERS1305867

48.943

97.929

0.479
  pilT Legionella pneumophila strain Lp02

48.943

97.929

0.479
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.433

99.704

0.423
  pilU Vibrio cholerae strain A1552

38.484

100

0.391
  pilU Pseudomonas stutzeri DSM 10701

39.039

98.521

0.385
  pilU Acinetobacter baylyi ADP1

38.509

95.266

0.367