Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | IU369_RS08835 | Genome accession | NZ_CP064356 |
| Coordinates | 1729762..1730829 (+) | Length | 355 a.a. |
| NCBI ID | WP_217924204.1 | Uniprot ID | - |
| Organism | Miltoncostaea oceani strain SCSIO 61214 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1724762..1735829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IU369_RS08815 | ruvX | 1725500..1725895 (+) | 396 | WP_217924200.1 | Holliday junction resolvase RuvX | - |
| IU369_RS08820 | mltG | 1725892..1726770 (+) | 879 | WP_217924201.1 | endolytic transglycosylase MltG | - |
| IU369_RS08825 | aroE | 1726767..1727582 (+) | 816 | WP_217924202.1 | shikimate dehydrogenase | - |
| IU369_RS08830 | - | 1727671..1729650 (+) | 1980 | WP_217924203.1 | ATPase, T2SS/T4P/T4SS family | - |
| IU369_RS08835 | pilT | 1729762..1730829 (+) | 1068 | WP_217924204.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| IU369_RS08840 | - | 1730826..1732043 (+) | 1218 | WP_217924205.1 | type II secretion system F family protein | - |
| IU369_RS08845 | - | 1732487..1733866 (-) | 1380 | WP_217924206.1 | MGMT family protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 38933.84 Da Isoelectric Point: 6.6590
>NTDB_id=501003 IU369_RS08835 WP_217924204.1 1729762..1730829(+) (pilT) [Miltoncostaea oceani strain SCSIO 61214]
MVDFAELITNVIASGASDLHLSVGAPPVMRLNGELVRLGDAPLTSQETRELIYGLLSQDQRQRLETDLELDLSYAVPGRI
RFRVNAYYQRAALGAAFRVVPTGLKTLEELSLPSSLREWTTKPRGLVLVTGPTGSGKSTTLASLINEINEKRACHIMTVE
DPIEFLHRHKRSMINQREVGADTHSFANALRSVLRQDPDVILVGEMRDLETMQIAITAAETGHLVFATLHTSDAPQTIDR
VIDVFPPHQQEQVRIMLANGLQGVCCQQLVPTISGSRAVACEVLMPTPAVRNLIREGKTHQIYSVMQTGSSFGMQTMDAT
LASLVRQGVISMDMALERAGHPDELKRLLGLVKAA
MVDFAELITNVIASGASDLHLSVGAPPVMRLNGELVRLGDAPLTSQETRELIYGLLSQDQRQRLETDLELDLSYAVPGRI
RFRVNAYYQRAALGAAFRVVPTGLKTLEELSLPSSLREWTTKPRGLVLVTGPTGSGKSTTLASLINEINEKRACHIMTVE
DPIEFLHRHKRSMINQREVGADTHSFANALRSVLRQDPDVILVGEMRDLETMQIAITAAETGHLVFATLHTSDAPQTIDR
VIDVFPPHQQEQVRIMLANGLQGVCCQQLVPTISGSRAVACEVLMPTPAVRNLIREGKTHQIYSVMQTGSSFGMQTMDAT
LASLVRQGVISMDMALERAGHPDELKRLLGLVKAA
Nucleotide
Download Length: 1068 bp
>NTDB_id=501003 IU369_RS08835 WP_217924204.1 1729762..1730829(+) (pilT) [Miltoncostaea oceani strain SCSIO 61214]
ATGGTCGACTTCGCCGAGCTCATCACGAACGTCATCGCGAGCGGTGCCAGCGACCTGCACCTGTCGGTCGGCGCCCCGCC
GGTGATGCGGCTCAACGGGGAGCTCGTCCGCCTCGGCGACGCGCCCCTCACCTCCCAGGAGACCCGGGAGCTGATCTACG
GGCTCCTCAGCCAGGACCAGCGGCAGCGGCTCGAGACGGACCTGGAGCTCGACCTGTCGTACGCGGTCCCCGGCCGCATC
CGCTTCCGCGTGAACGCCTACTACCAGCGCGCCGCGCTCGGGGCGGCGTTCCGCGTGGTCCCGACGGGCCTGAAGACCCT
GGAGGAGCTGAGCCTTCCGTCGTCGCTGCGCGAGTGGACGACGAAGCCGCGCGGGCTGGTGCTCGTGACGGGGCCGACCG
GCTCCGGCAAGTCGACGACCCTCGCGTCGCTGATCAACGAGATCAACGAGAAGCGCGCGTGCCACATCATGACGGTCGAG
GACCCCATCGAGTTCCTCCACCGCCACAAGCGCTCGATGATCAACCAGCGCGAGGTCGGCGCGGACACGCACAGCTTCGC
GAACGCCCTGCGCAGCGTCCTCCGCCAGGACCCCGACGTGATCCTCGTCGGCGAGATGCGCGACCTGGAGACGATGCAGA
TCGCGATCACGGCGGCCGAGACCGGCCACCTCGTGTTCGCGACGCTGCACACCTCGGACGCGCCGCAGACGATCGACCGC
GTGATCGACGTGTTCCCGCCGCACCAGCAGGAGCAGGTCCGGATCATGCTGGCGAACGGCCTGCAGGGCGTCTGCTGCCA
GCAGCTCGTCCCGACGATCTCGGGGAGCCGCGCGGTGGCGTGCGAGGTGCTGATGCCGACGCCCGCCGTCCGGAACCTGA
TCCGGGAGGGCAAGACCCACCAGATCTACTCGGTGATGCAGACGGGCTCGTCGTTCGGCATGCAGACGATGGACGCGACC
CTCGCGAGCCTCGTCCGCCAGGGCGTGATCAGCATGGACATGGCCCTGGAGCGCGCCGGCCACCCCGACGAGCTGAAGCG
CCTGCTCGGGTTGGTGAAGGCCGCATGA
ATGGTCGACTTCGCCGAGCTCATCACGAACGTCATCGCGAGCGGTGCCAGCGACCTGCACCTGTCGGTCGGCGCCCCGCC
GGTGATGCGGCTCAACGGGGAGCTCGTCCGCCTCGGCGACGCGCCCCTCACCTCCCAGGAGACCCGGGAGCTGATCTACG
GGCTCCTCAGCCAGGACCAGCGGCAGCGGCTCGAGACGGACCTGGAGCTCGACCTGTCGTACGCGGTCCCCGGCCGCATC
CGCTTCCGCGTGAACGCCTACTACCAGCGCGCCGCGCTCGGGGCGGCGTTCCGCGTGGTCCCGACGGGCCTGAAGACCCT
GGAGGAGCTGAGCCTTCCGTCGTCGCTGCGCGAGTGGACGACGAAGCCGCGCGGGCTGGTGCTCGTGACGGGGCCGACCG
GCTCCGGCAAGTCGACGACCCTCGCGTCGCTGATCAACGAGATCAACGAGAAGCGCGCGTGCCACATCATGACGGTCGAG
GACCCCATCGAGTTCCTCCACCGCCACAAGCGCTCGATGATCAACCAGCGCGAGGTCGGCGCGGACACGCACAGCTTCGC
GAACGCCCTGCGCAGCGTCCTCCGCCAGGACCCCGACGTGATCCTCGTCGGCGAGATGCGCGACCTGGAGACGATGCAGA
TCGCGATCACGGCGGCCGAGACCGGCCACCTCGTGTTCGCGACGCTGCACACCTCGGACGCGCCGCAGACGATCGACCGC
GTGATCGACGTGTTCCCGCCGCACCAGCAGGAGCAGGTCCGGATCATGCTGGCGAACGGCCTGCAGGGCGTCTGCTGCCA
GCAGCTCGTCCCGACGATCTCGGGGAGCCGCGCGGTGGCGTGCGAGGTGCTGATGCCGACGCCCGCCGTCCGGAACCTGA
TCCGGGAGGGCAAGACCCACCAGATCTACTCGGTGATGCAGACGGGCTCGTCGTTCGGCATGCAGACGATGGACGCGACC
CTCGCGAGCCTCGTCCGCCAGGGCGTGATCAGCATGGACATGGCCCTGGAGCGCGCCGGCCACCCCGACGAGCTGAAGCG
CCTGCTCGGGTTGGTGAAGGCCGCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
54.023 |
98.028 |
0.53 |
| pilT | Acinetobacter baumannii D1279779 |
52.035 |
96.901 |
0.504 |
| pilT | Acinetobacter nosocomialis M2 |
52.035 |
96.901 |
0.504 |
| pilT | Acinetobacter baumannii strain A118 |
52.035 |
96.901 |
0.504 |
| pilT | Pseudomonas aeruginosa PAK |
52.035 |
96.901 |
0.504 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.453 |
96.901 |
0.499 |
| pilT | Acinetobacter baylyi ADP1 |
51.453 |
96.901 |
0.499 |
| pilT | Neisseria meningitidis 8013 |
51.603 |
96.62 |
0.499 |
| pilT | Neisseria gonorrhoeae MS11 |
51.312 |
96.62 |
0.496 |
| pilT | Legionella pneumophila strain Lp02 |
50.296 |
95.211 |
0.479 |
| pilT | Legionella pneumophila strain ERS1305867 |
50.296 |
95.211 |
0.479 |
| pilT | Vibrio cholerae strain A1552 |
51.368 |
92.676 |
0.476 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.368 |
92.676 |
0.476 |
| pilU | Acinetobacter baylyi ADP1 |
40.669 |
100 |
0.411 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.595 |
98.873 |
0.411 |
| pilU | Vibrio cholerae strain A1552 |
41.261 |
98.31 |
0.406 |