Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   A0071_RS03030 Genome accession   NZ_CP063091
Coordinates   612454..612693 (-) Length   79 a.a.
NCBI ID   WP_027304938.1    Uniprot ID   A0A1W6BUE7
Organism   Campylobacter cuniculorum strain 2010D-8469     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607454..617693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0071_RS03015 (A0071_03015) - 608488..608718 (-) 231 WP_027304935.1 hypothetical protein -
  A0071_RS03020 (A0071_03020) - 608825..611695 (-) 2871 WP_027304936.1 FAD-binding and (Fe-S)-binding domain-containing protein -
  A0071_RS03025 (A0071_03025) - 611910..612488 (-) 579 WP_415270572.1 ribonuclease HII -
  A0071_RS03030 (A0071_03030) Cj0011c 612454..612693 (-) 240 WP_027304938.1 ComEA family DNA-binding protein Machinery gene
  A0071_RS03035 (A0071_03035) ilvD 612849..614525 (+) 1677 WP_027304939.1 dihydroxy-acid dehydratase -
  A0071_RS03040 (A0071_03040) - 614729..615643 (+) 915 WP_035175580.1 cytochrome-c peroxidase -
  A0071_RS09835 - 615630..616331 (+) 702 Protein_600 DAHL domain-containing protein -
  A0071_RS09840 - 616842..617426 (+) 585 WP_415270573.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8866.31 Da        Isoelectric Point: 5.1504

>NTDB_id=492857 A0071_RS03030 WP_027304938.1 612454..612693(-) (Cj0011c) [Campylobacter cuniculorum strain 2010D-8469]
MKKILFLIFAFISLLSAAVNINTASKEELQTLKGIGETKAEAILEYRKDQNFTSIEDIKKVKGIGEKTFEEIKDSISVE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=492857 A0071_RS03030 WP_027304938.1 612454..612693(-) (Cj0011c) [Campylobacter cuniculorum strain 2010D-8469]
ATGAAAAAAATCTTATTTTTAATCTTTGCTTTTATAAGCCTTTTATCTGCAGCTGTTAATATCAATACCGCGAGTAAAGA
AGAACTTCAAACTCTTAAAGGTATAGGTGAAACAAAGGCTGAAGCGATTTTAGAATACCGCAAAGACCAAAATTTCACTA
GCATAGAAGACATTAAAAAGGTTAAAGGCATAGGTGAAAAAACCTTTGAAGAAATCAAAGACTCCATTTCAGTTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BUE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.823

100

0.658
  comEA Vibrio parahaemolyticus RIMD 2210633

43.478

100

0.506
  comEA Bacillus subtilis subsp. subtilis str. 168

60.938

81.013

0.494
  comE Neisseria gonorrhoeae MS11

48.148

100

0.494
  comE Neisseria gonorrhoeae MS11

48.148

100

0.494
  comE Neisseria gonorrhoeae MS11

48.148

100

0.494
  comE Neisseria gonorrhoeae MS11

48.148

100

0.494
  comEA Vibrio campbellii strain DS40M4

37.634

100

0.443
  comEA Vibrio cholerae strain A1552

63.462

65.823

0.418
  comEA Vibrio cholerae C6706

63.462

65.823

0.418
  comEA Lactococcus lactis subsp. cremoris KW2

53.226

78.481

0.418
  comEA Latilactobacillus sakei subsp. sakei 23K

50

81.013

0.405
  comEA Acinetobacter baylyi ADP1

50.82

77.215

0.392
  comEA Staphylococcus aureus N315

50.82

77.215

0.392
  comE1/comEA Haemophilus influenzae Rd KW20

46.97

83.544

0.392
  comEA Staphylococcus aureus MW2

50.82

77.215

0.392
  comEA/comE1 Glaesserella parasuis strain SC1401

49.206

79.747

0.392
  comEA Acinetobacter baumannii D1279779

46.875

81.013

0.38
  comEA Acinetobacter baumannii strain A118

45.312

81.013

0.367