Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   IBZ16_RS20700 Genome accession   NZ_CP061075
Coordinates   4310615..4311637 (-) Length   340 a.a.
NCBI ID   WP_413712824.1    Uniprot ID   -
Organism   Serratia marcescens strain 9667     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4305615..4316637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBZ16_RS20670 (IBZ16_20645) - 4306416..4306928 (+) 513 WP_033639394.1 SprT family zinc-dependent metalloprotease -
  IBZ16_RS20675 (IBZ16_20650) endA 4307030..4307725 (+) 696 WP_015379043.1 deoxyribonuclease I -
  IBZ16_RS20680 (IBZ16_20655) rsmE 4307795..4308526 (+) 732 WP_004937458.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  IBZ16_RS20685 (IBZ16_20660) gshB 4308537..4309487 (+) 951 WP_016930084.1 glutathione synthase -
  IBZ16_RS20690 (IBZ16_20665) - 4309633..4310196 (+) 564 WP_033635940.1 YqgE/AlgH family protein -
  IBZ16_RS20695 (IBZ16_20670) ruvX 4310196..4310618 (+) 423 WP_015379046.1 Holliday junction resolvase RuvX -
  IBZ16_RS20700 (IBZ16_20675) pilT 4310615..4311637 (-) 1023 WP_413712824.1 type IV pilus twitching motility protein PilT Machinery gene
  IBZ16_RS20705 (IBZ16_20680) - 4311658..4312365 (+) 708 WP_033639392.1 YggS family pyridoxal phosphate-dependent enzyme -
  IBZ16_RS20710 (IBZ16_20685) proC 4312385..4313206 (+) 822 WP_048796772.1 pyrroline-5-carboxylate reductase -
  IBZ16_RS20715 (IBZ16_20690) - 4313238..4313792 (+) 555 WP_004937436.1 YggT family protein -
  IBZ16_RS20720 (IBZ16_20695) yggU 4313789..4314079 (+) 291 WP_004948014.1 DUF167 family protein YggU -
  IBZ16_RS20725 (IBZ16_20700) - 4314098..4314691 (+) 594 WP_004937429.1 XTP/dITP diphosphatase -
  IBZ16_RS20730 (IBZ16_20705) hemW 4314684..4315826 (+) 1143 WP_048796774.1 radical SAM family heme chaperone HemW -
  IBZ16_RS20735 (IBZ16_20710) - 4315865..4316299 (-) 435 WP_016930094.1 DUF29 domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36504.82 Da        Isoelectric Point: 7.2889

>NTDB_id=480340 IBZ16_RS20700 WP_413712824.1 4310615..4311637(-) (pilT) [Serratia marcescens strain 9667]
MDIDEFVALSVKHNASDLHLCAGHPPMLRIDGELQPLAAAPTLTAQGVQALCDGLLNAQQRESLRRLGQVDLALHRPGGE
RLRANVFQQSAGISLALRRIAGQSPSLAELAAPAIVPALLRRDDGLILVTGATGSGKSTTLAAMIDEINRHQQRHILTLE
DPIEFLHRSRRSLIQQREIGRDSHSFDAALRAALREDPDVILLGELRDTATIRLALTAAETGHLVLATLHTRSAPQAVER
LVDVFPAEEKLYVRAQLAGSLQAVIAQKLMRRPGGGRVAIFEVLTATAAVSNLIREGKTHQLASVLQTGAQSGMQTFEQG
LQQRIDAGVLGECAGERAGV

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=480340 IBZ16_RS20700 WP_413712824.1 4310615..4311637(-) (pilT) [Serratia marcescens strain 9667]
ATGGATATCGATGAATTCGTGGCCCTTAGTGTAAAGCATAATGCTTCCGATCTGCACCTTTGTGCCGGTCATCCGCCGAT
GTTGCGCATCGACGGTGAACTGCAGCCGCTGGCGGCGGCGCCAACGCTGACGGCGCAAGGCGTGCAGGCCCTCTGCGACG
GATTGCTGAATGCGCAGCAGCGCGAGAGCCTGCGGCGGCTGGGGCAGGTCGATCTGGCGTTGCACAGGCCGGGCGGGGAG
CGGCTGCGGGCCAACGTTTTTCAACAAAGCGCGGGGATTTCTCTCGCGTTGCGGCGTATCGCCGGGCAATCGCCTTCGCT
TGCCGAGCTGGCGGCGCCGGCCATTGTCCCGGCGTTGCTGCGGCGCGACGACGGGCTTATCCTGGTCACCGGCGCCACCG
GCAGCGGCAAGTCCACCACGCTGGCGGCGATGATCGACGAGATCAACCGGCACCAGCAGCGGCATATTTTGACGCTGGAG
GATCCGATCGAATTCCTGCACCGCAGCCGGCGATCGCTGATCCAGCAGCGGGAGATCGGCCGCGACAGCCACAGCTTCGA
TGCGGCGTTGCGCGCCGCGCTGCGCGAAGATCCGGATGTGATCCTGCTGGGCGAGCTGCGCGATACCGCCACCATCCGGC
TGGCGCTCACTGCGGCGGAGACCGGCCACCTGGTGCTGGCGACGCTGCATACCCGCAGCGCGCCGCAGGCGGTGGAACGG
CTGGTGGACGTGTTTCCGGCGGAAGAGAAACTCTATGTGCGCGCCCAGTTGGCCGGCAGTCTGCAGGCGGTGATCGCGCA
AAAGCTGATGAGGCGGCCCGGCGGCGGACGCGTGGCGATCTTCGAAGTGCTGACGGCGACGGCGGCGGTCAGCAACCTGA
TCCGCGAAGGGAAAACGCATCAGTTGGCGAGCGTGTTGCAAACCGGCGCGCAGTCCGGCATGCAAACCTTTGAGCAAGGT
TTGCAGCAGCGGATCGACGCCGGCGTGTTGGGAGAGTGCGCGGGGGAAAGGGCGGGTGTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

54.848

97.059

0.532
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.848

97.059

0.532
  pilT Neisseria meningitidis 8013

50.294

100

0.503
  pilT Acinetobacter baylyi ADP1

51.36

97.353

0.5
  pilT Pseudomonas aeruginosa PAK

49.267

100

0.494
  pilT Acinetobacter nosocomialis M2

50.909

97.059

0.494
  pilT Acinetobacter baumannii strain A118

50.909

97.059

0.494
  pilT Acinetobacter baumannii D1279779

50.909

97.059

0.494
  pilT Neisseria gonorrhoeae MS11

49.704

99.412

0.494
  pilT Pseudomonas stutzeri DSM 10701

48.673

99.706

0.485
  pilT Legionella pneumophila strain Lp02

48.529

100

0.485
  pilT Legionella pneumophila strain ERS1305867

48.529

100

0.485
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.034

100

0.456
  pilU Pseudomonas stutzeri DSM 10701

38.643

99.706

0.385
  pilU Acinetobacter baylyi ADP1

40.248

95

0.382
  pilU Vibrio cholerae strain A1552

39.877

95.882

0.382