Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   H9N29_RS01005 Genome accession   NZ_CP060585
Coordinates   213279..214259 (-) Length   326 a.a.
NCBI ID   WP_198081366.1    Uniprot ID   -
Organism   Salmonella enterica strain GX1006     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208279..219259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N29_RS00975 endA 208737..209444 (+) 708 WP_000286124.1 deoxyribonuclease I -
  H9N29_RS00980 rsmE 209521..210252 (+) 732 WP_001675718.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  H9N29_RS00985 gshB 210272..211219 (+) 948 WP_000593248.1 glutathione synthase -
  H9N29_RS00990 - 211435..211998 (+) 564 WP_001053167.1 YqgE/AlgH family protein -
  H9N29_RS00995 ruvX 211998..212414 (+) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  H9N29_RS01000 - 212461..213147 (-) 687 WP_000098324.1 IclR family transcriptional regulator domain-containing protein -
  H9N29_RS01005 pilT 213279..214259 (-) 981 WP_198081366.1 type IV pilus twitching motility protein PilT Machinery gene
  H9N29_RS01010 - 214277..214981 (+) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  H9N29_RS01015 - 215000..215566 (+) 567 WP_001094848.1 YggT family protein -
  H9N29_RS01020 yggU 215563..215853 (+) 291 WP_001277203.1 DUF167 family protein YggU -
  H9N29_RS01025 - 215861..216454 (+) 594 WP_183054814.1 XTP/dITP diphosphatase -
  H9N29_RS01030 hemW 216447..217583 (+) 1137 WP_001096521.1 radical SAM family heme chaperone HemW -
  H9N29_RS01035 - 217675..218682 (-) 1008 WP_000252198.1 DUF1202 domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36137.34 Da        Isoelectric Point: 7.8012

>NTDB_id=476712 H9N29_RS01005 WP_198081366.1 213279..214259(-) (pilT) [Salmonella enterica strain GX1006]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALRQDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=476712 H9N29_RS01005 WP_198081366.1 213279..214259(-) (pilT) [Salmonella enterica strain GX1006]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACAGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAGT
CCACCACGCTGGCGGCGATGGTGGGATATCTTAATCAACATGCTGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCAGCGTTACGTCAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTAGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGTCAACTGGCGGGTAGTCTGCGCGCTGTACTATCGCAAAAACTGGAGGT
CGACAGGCAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Acinetobacter baumannii D1279779

44.954

100

0.451
  pilT Acinetobacter baumannii strain A118

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Acinetobacter nosocomialis M2

44.648

100

0.448
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.185

97.853

0.383
  pilU Pseudomonas stutzeri DSM 10701

36.254

100

0.368
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365