Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H4B47_RS07355 Genome accession   NZ_CP060029
Coordinates   1506124..1506942 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AbCTX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501124..1511942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B47_RS07320 (H4B47_07340) - 1501707..1501836 (-) 130 Protein_1420 hypothetical protein -
  H4B47_RS07325 (H4B47_07345) rpoZ 1501875..1502153 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H4B47_RS07330 (H4B47_07350) gmk 1502226..1502855 (-) 630 WP_000015937.1 guanylate kinase -
  H4B47_RS07335 (H4B47_07355) ispH 1502978..1503928 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H4B47_RS07340 (H4B47_07360) fimU 1504098..1504571 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H4B47_RS07345 (H4B47_07365) pilV 1504565..1505125 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H4B47_RS07350 (H4B47_07370) pilW 1505126..1506127 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H4B47_RS07355 (H4B47_07375) pilX 1506124..1506942 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H4B47_RS07360 (H4B47_07380) pilY1 1506954..1510808 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H4B47_RS07365 (H4B47_07385) pilY2 1510821..1511303 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  H4B47_RS07370 (H4B47_07390) pilE 1511300..1511725 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=473454 H4B47_RS07355 WP_000149374.1 1506124..1506942(+) (pilX) [Acinetobacter baumannii strain AbCTX1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=473454 H4B47_RS07355 WP_000149374.1 1506124..1506942(+) (pilX) [Acinetobacter baumannii strain AbCTX1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993