Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   H1Q58_RS06980 Genome accession   NZ_CP059540
Coordinates   1399888..1400928 (+) Length   346 a.a.
NCBI ID   WP_182093211.1    Uniprot ID   A0A7D7RBP8
Organism   Planococcus maritimus strain XJ11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394888..1405928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q58_RS06955 (H1Q58_06955) - 1395039..1395590 (-) 552 WP_182093206.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H1Q58_RS06960 (H1Q58_06960) - 1395574..1395981 (-) 408 WP_182093207.1 type II secretion system protein -
  H1Q58_RS06965 (H1Q58_06965) - 1396413..1396772 (+) 360 WP_182093208.1 hypothetical protein -
  H1Q58_RS06970 (H1Q58_06970) - 1396774..1398201 (+) 1428 WP_182093209.1 VanW family protein -
  H1Q58_RS06975 (H1Q58_06975) - 1398222..1399883 (+) 1662 WP_182093210.1 ATPase, T2SS/T4P/T4SS family -
  H1Q58_RS06980 (H1Q58_06980) pilT 1399888..1400928 (+) 1041 WP_182093211.1 type IV pilus twitching motility protein PilT Machinery gene
  H1Q58_RS06985 (H1Q58_06985) - 1400929..1402140 (+) 1212 WP_182093212.1 type II secretion system F family protein -
  H1Q58_RS06990 (H1Q58_06990) - 1402271..1402735 (+) 465 WP_182093213.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H1Q58_RS06995 (H1Q58_06995) pilM 1402774..1403712 (+) 939 WP_182093214.1 pilus assembly protein PilM -
  H1Q58_RS07000 (H1Q58_07000) - 1403713..1404453 (+) 741 WP_249929489.1 fimbrial assembly protein -
  H1Q58_RS07005 (H1Q58_07005) - 1404450..1405211 (+) 762 WP_249929491.1 pilus assembly protein PilO -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37873.44 Da        Isoelectric Point: 6.7842

>NTDB_id=470263 H1Q58_RS06980 WP_182093211.1 1399888..1400928(+) (pilT) [Planococcus maritimus strain XJ11]
MPTTYIDKVLTQARNLNVSDIHLTTGIPPVFRMNGTLKRYGDENLTPDMTKEIAKALMPEILWQQFLDKGEMDFSYSLSG
VARFRVNSFHQRGSISHAFRTIPTEIPTIADLQMPKTLANLAETPQGLILVTGPTGSGKSTTLAAMIRHINENLTKHIIT
LEDPIEYLHRHGSSIIDQREVGFDTDSFAAGLRAALRQDPDVVLVGEMRDLETISTAITAAETGHLVMATLHTSSAASTI
ERIIDVFPHGQQAQVRTQLAGILKAVVSQRLLPTADGTGRIAATEILINNPAVANLIRTEKVHQIPNVILTNRSFGMHMM
VSSVQELLATGKISRQTAQPFLEGGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=470263 H1Q58_RS06980 WP_182093211.1 1399888..1400928(+) (pilT) [Planococcus maritimus strain XJ11]
ATGCCAACCACTTATATAGATAAAGTCCTGACGCAAGCACGCAACTTAAATGTTTCGGATATTCATTTGACGACCGGCAT
CCCGCCCGTTTTCCGCATGAACGGCACTTTGAAGCGCTATGGCGATGAGAACTTGACACCTGACATGACCAAGGAAATCG
CCAAAGCGTTGATGCCGGAAATTCTTTGGCAGCAATTTCTCGATAAAGGCGAAATGGACTTTTCCTATTCGCTTTCTGGA
GTGGCCCGTTTTCGCGTCAATTCCTTCCACCAGCGCGGATCGATTTCACATGCCTTCCGGACGATTCCGACAGAAATCCC
GACAATCGCTGATTTGCAAATGCCGAAAACCTTGGCGAATTTAGCGGAGACACCGCAAGGGCTCATTTTGGTGACAGGGC
CGACTGGGTCAGGAAAGTCGACCACCTTGGCAGCGATGATTCGCCACATTAATGAAAATTTAACTAAACACATCATCACA
TTAGAAGACCCAATTGAGTATTTGCACCGCCACGGTTCATCTATTATTGACCAGCGCGAAGTTGGTTTTGACACAGATTC
ATTCGCAGCCGGTTTGCGCGCAGCTTTGCGCCAAGATCCGGATGTCGTTTTGGTCGGGGAAATGCGCGATTTGGAGACGA
TTTCGACCGCCATCACCGCCGCTGAAACCGGTCACCTTGTGATGGCTACCTTGCATACATCCAGTGCAGCTTCGACAATC
GAGCGAATCATCGATGTGTTTCCGCACGGACAGCAAGCGCAAGTGCGCACGCAGCTCGCCGGGATCCTCAAAGCGGTCGT
GTCCCAACGTTTGCTGCCGACCGCTGACGGCACAGGACGAATCGCTGCCACCGAAATTCTCATTAACAACCCGGCGGTGG
CGAACTTAATCCGCACTGAAAAAGTTCACCAAATTCCGAATGTCATTTTGACGAATCGTTCGTTCGGCATGCATATGATG
GTGTCGTCTGTTCAGGAACTATTGGCGACTGGTAAAATCAGTCGTCAGACCGCACAGCCATTCCTTGAAGGAGGTGAGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7RBP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.286

91.04

0.494
  pilT Neisseria meningitidis 8013

50.299

96.532

0.486
  pilT Neisseria gonorrhoeae MS11

50

96.532

0.483
  pilT Pseudomonas stutzeri DSM 10701

48.387

98.555

0.477
  pilT Pseudomonas aeruginosa PAK

47.214

98.555

0.465
  pilT Vibrio cholerae strain A1552

49.235

94.509

0.465
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.235

94.509

0.465
  pilT Acinetobacter baumannii strain A118

49.221

92.775

0.457
  pilT Acinetobacter baumannii D1279779

49.221

92.775

0.457
  pilT Acinetobacter nosocomialis M2

48.91

92.775

0.454
  pilT Acinetobacter baylyi ADP1

48.91

92.775

0.454
  pilT Legionella pneumophila strain Lp02

47.531

93.642

0.445
  pilT Legionella pneumophila strain ERS1305867

47.531

93.642

0.445
  pilU Pseudomonas stutzeri DSM 10701

44.375

92.486

0.41
  pilU Vibrio cholerae strain A1552

40.419

96.532

0.39
  pilU Acinetobacter baylyi ADP1

40.81

92.775

0.379