Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H1D55_RS10085 Genome accession   NZ_CP059474
Coordinates   2160678..2161313 (+) Length   211 a.a.
NCBI ID   WP_000472268.1    Uniprot ID   A0A6F8TCP7
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155678..2166313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS10070 adeT2 2156738..2157724 (-) 987 WP_000712902.1 putative multidrug efflux protein AdeT2 -
  H1D55_RS10075 - 2157804..2158619 (-) 816 WP_000547772.1 NAD-dependent epimerase/dehydratase family protein -
  H1D55_RS10080 recG 2158640..2160685 (+) 2046 WP_000204946.1 ATP-dependent DNA helicase RecG -
  H1D55_RS10085 comF 2160678..2161313 (+) 636 WP_000472268.1 ComF family protein Machinery gene
  H1D55_RS10090 - 2161316..2161717 (-) 402 WP_000849700.1 NUDIX hydrolase -
  H1D55_RS10095 - 2161732..2162313 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  H1D55_RS10100 - 2162471..2163484 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  H1D55_RS10105 - 2163554..2163841 (-) 288 WP_000250997.1 STAS domain-containing protein -
  H1D55_RS10110 - 2163853..2164494 (-) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  H1D55_RS10115 - 2164521..2165201 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H1D55_RS10120 mlaE 2165201..2165980 (-) 780 WP_001091947.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24574.70 Da        Isoelectric Point: 9.7140

>NTDB_id=469918 H1D55_RS10085 WP_000472268.1 2160678..2161313(+) (comF) [Acinetobacter baumannii strain M175-3]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLHQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=469918 H1D55_RS10085 WP_000472268.1 2160678..2161313(+) (comF) [Acinetobacter baumannii strain M175-3]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACACCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCGTCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TCP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986