Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HZT08_RS03960 Genome accession   NZ_CP058790
Coordinates   808297..809277 (+) Length   326 a.a.
NCBI ID   WP_001349546.1    Uniprot ID   A0A0E0XW35
Organism   Shigella flexneri strain STLIN_6     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 803297..814277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT08_RS03930 (HZT08_03865) - 803672..804658 (-) 987 WP_000784005.1 TRAP transporter substrate-binding protein -
  HZT08_RS03935 (HZT08_03870) hemW 804974..806110 (-) 1137 WP_000239917.1 radical SAM family heme chaperone HemW -
  HZT08_RS03940 (HZT08_03875) - 806103..806696 (-) 594 WP_001174745.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  HZT08_RS03945 (HZT08_03880) yggU 806704..806994 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  HZT08_RS03950 (HZT08_03885) yggT 806991..807557 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  HZT08_RS03955 (HZT08_03890) yggS 807575..808279 (-) 705 WP_240766498.1 pyridoxal phosphate homeostasis protein -
  HZT08_RS03960 (HZT08_03895) pilT 808297..809277 (+) 981 WP_001349546.1 type IV pilus twitching motility protein PilT Machinery gene
  HZT08_RS03965 (HZT08_03900) ruvX 809453..809869 (-) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  HZT08_RS03970 (HZT08_03905) - 809869..810432 (-) 564 WP_001053178.1 YqgE/AlgH family protein -
  HZT08_RS03975 (HZT08_03910) gshB 810541..811491 (-) 951 WP_000593273.1 glutathione synthase -
  HZT08_RS03980 (HZT08_03915) rsmE 811504..812235 (-) 732 WP_001222508.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HZT08_RS03985 (HZT08_03920) endA 812315..813022 (-) 708 WP_000286500.1 deoxyribonuclease I -
  HZT08_RS03990 (HZT08_03925) - 813117..813614 (-) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35942.12 Da        Isoelectric Point: 5.7980

>NTDB_id=465441 HZT08_RS03960 WP_001349546.1 808297..809277(+) (pilT) [Shigella flexneri strain STLIN_6]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=465441 HZT08_RS03960 WP_001349546.1 808297..809277(+) (pilT) [Shigella flexneri strain STLIN_6]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGCAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAAAATGGCCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTTAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACTTTCGCATCGGGGTTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCACTGACGG
CGGCAGAAACCGGGCATTTGGTGCTGGCAACATTACATACGCGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCAGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTATTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0XW35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365