Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HVW68_RS03755 Genome accession   NZ_CP057864
Coordinates   770006..770986 (+) Length   326 a.a.
NCBI ID   WP_181825979.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB12-C19     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765006..775986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVW68_RS03725 (HVW68_03720) - 765612..766619 (+) 1008 WP_181825977.1 DUF1202 family protein -
  HVW68_RS03730 (HVW68_03725) hemW 766682..767818 (-) 1137 WP_032937402.1 radical SAM family heme chaperone HemW -
  HVW68_RS03735 (HVW68_03730) - 767811..768404 (-) 594 WP_003027104.1 XTP/dITP diphosphatase -
  HVW68_RS03740 (HVW68_03735) yggU 768412..768702 (-) 291 WP_003027101.1 DUF167 family protein YggU -
  HVW68_RS03745 (HVW68_03740) - 768699..769265 (-) 567 WP_003825417.1 YggT family protein -
  HVW68_RS03750 (HVW68_03745) - 769284..769988 (-) 705 WP_181825978.1 YggS family pyridoxal phosphate-dependent enzyme -
  HVW68_RS03755 (HVW68_03750) pilT 770006..770986 (+) 981 WP_181825979.1 type IV pilus twitching motility protein PilT Machinery gene
  HVW68_RS03760 (HVW68_03755) ruvX 770983..771399 (-) 417 WP_181826196.1 Holliday junction resolvase RuvX -
  HVW68_RS03765 (HVW68_03760) - 771399..771962 (-) 564 WP_003027086.1 YqgE/AlgH family protein -
  HVW68_RS03770 (HVW68_03765) gshB 772074..773021 (-) 948 WP_003027083.1 glutathione synthase -
  HVW68_RS03775 (HVW68_03770) rsmE 773041..773772 (-) 732 WP_181825980.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HVW68_RS03780 (HVW68_03775) endA 773846..774553 (-) 708 WP_016150969.1 deoxyribonuclease I -
  HVW68_RS03785 (HVW68_03780) - 774648..775145 (-) 498 WP_003838223.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35791.86 Da        Isoelectric Point: 6.3638

>NTDB_id=462130 HVW68_RS03755 WP_181825979.1 770006..770986(+) (pilT) [Citrobacter freundii strain RHB12-C19]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRHGKVESAPFITPDVENLLMCSLSEQQQVQLQEQGQVDFAVTLTDSRRLRA
SAFVHLQGTSLALRLLPLDCPHLDDLQPPAVIPELLHSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYTSRRCLIQQREVGAHCASFATGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKAHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=462130 HVW68_RS03755 WP_181825979.1 770006..770986(+) (pilT) [Citrobacter freundii strain RHB12-C19]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCCGCGCG
TTGGCGCAGACATGGAAAAGTCGAAAGCGCACCGTTTATCACGCCTGACGTAGAGAATCTGCTGATGTGCTCGCTCAGTG
AGCAACAACAGGTACAGTTGCAGGAGCAAGGGCAGGTTGATTTTGCCGTTACCCTGACGGACTCCCGGCGGCTGCGCGCC
AGCGCATTTGTCCATCTGCAGGGAACCTCGCTGGCGCTAAGACTGCTACCGCTGGATTGTCCTCATTTAGACGATCTTCA
GCCTCCCGCGGTCATACCTGAACTGCTTCACAGTGAAAATGGGTTGATTCTGGTGACAGGCGCTACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGGCACATTCTGACGCTGGAAGATCCTATTGAA
TATCGCTACACCAGCCGACGTTGTCTGATTCAACAGCGGGAGGTGGGCGCACATTGCGCCTCTTTCGCCACCGGTTTGCG
CGGTGCGCTACGCGAAGATCCCGACGTTATTTTGCTGGGTGAGCTGCGCGACGTGGAAACCATTCGGCTGGCATTAACGG
CGGCGGAGACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCGCAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCAACAGAGAAAGATCCTGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTTCTTTCGCAAAAACTGGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAACTGCTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAGCGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTTTGCAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain Lp02

45.652

98.773

0.451
  pilT Legionella pneumophila strain ERS1305867

45.652

98.773

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.009

97.239

0.399
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

37.771

99.08

0.374