Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HVZ52_RS03800 Genome accession   NZ_CP057125
Coordinates   782366..783346 (+) Length   326 a.a.
NCBI ID   WP_103928580.1    Uniprot ID   -
Organism   Citrobacter sp. RHB36-C18     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777366..788346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ52_RS03765 (HVZ52_03765) ansB 777738..778784 (+) 1047 WP_016154404.1 L-asparaginase 2 -
  HVZ52_RS22995 - 778904..779010 (+) 107 Protein_742 DUF1202 family protein -
  HVZ52_RS03775 (HVZ52_03775) hemW 779042..780178 (-) 1137 WP_131380042.1 radical SAM family heme chaperone HemW -
  HVZ52_RS03780 (HVZ52_03780) - 780171..780764 (-) 594 WP_016154402.1 XTP/dITP diphosphatase -
  HVZ52_RS03785 (HVZ52_03785) yggU 780772..781062 (-) 291 WP_005123286.1 DUF167 family protein YggU -
  HVZ52_RS03790 (HVZ52_03790) - 781059..781625 (-) 567 WP_016154401.1 YggT family protein -
  HVZ52_RS03795 (HVZ52_03795) - 781644..782348 (-) 705 WP_181598884.1 YggS family pyridoxal phosphate-dependent enzyme -
  HVZ52_RS03800 (HVZ52_03800) pilT 782366..783346 (+) 981 WP_103928580.1 type IV pilus twitching motility protein PilT Machinery gene
  HVZ52_RS03805 (HVZ52_03805) ruvX 783343..783759 (-) 417 WP_003825428.1 Holliday junction resolvase RuvX -
  HVZ52_RS03810 (HVZ52_03810) - 783759..784322 (-) 564 WP_016154395.1 YqgE/AlgH family protein -
  HVZ52_RS03815 (HVZ52_03815) gshB 784499..785446 (-) 948 WP_016154394.1 glutathione synthase -
  HVZ52_RS03820 (HVZ52_03820) rsmE 785459..786190 (-) 732 WP_016154393.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HVZ52_RS03825 (HVZ52_03825) endA 786266..786973 (-) 708 WP_019077649.1 deoxyribonuclease I -
  HVZ52_RS03830 (HVZ52_03830) - 787068..787565 (-) 498 WP_016157438.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35880.90 Da        Isoelectric Point: 6.1727

>NTDB_id=461310 HVZ52_RS03800 WP_103928580.1 782366..783346(+) (pilT) [Citrobacter sp. RHB36-C18]
MNMEEIVALSVKHNVSDLHLCNAWPARWRIGGKVEIAPFTPPDVENLLTCWLSEQQQVQWREQGQIDFALTLADSRRLRA
SAFAHQQGTSLALRLLPLECPRLDDLQTPEAIPELLHGENGLVLVTGATGSGKSTTLAAMVEYLNQHIAGHILTLEDPIE
YRYTSQRCLIQQREVGVHCASFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDT
FPAQEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSQQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=461310 HVZ52_RS03800 WP_103928580.1 782366..783346(+) (pilT) [Citrobacter sp. RHB36-C18]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
CTGGCGCATAGGTGGAAAAGTCGAAATAGCACCATTTACTCCCCCTGACGTGGAGAATCTGCTGACGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTGGCGGGAACAGGGGCAGATTGATTTTGCCCTTACGCTGGCGGACTCCCGGCGTCTACGCGCC
AGCGCATTTGCTCATCAGCAGGGAACCTCGCTGGCGCTAAGATTGCTACCGCTTGAATGTCCTCGTTTAGACGATCTTCA
GACCCCGGAGGCCATACCTGAACTGCTGCACGGTGAAAATGGATTAGTTCTGGTCACTGGAGCCACCGGCAGCGGTAAAT
CAACCACCCTAGCGGCGATGGTGGAGTACCTTAATCAACATATTGCGGGGCATATTCTGACGCTGGAAGATCCGATTGAA
TATCGCTACACCAGCCAGCGTTGTCTTATTCAACAGCGGGAGGTGGGCGTACACTGCGCTTCTTTTGCTGCCGGTTTGCG
CGGCGCGTTACGCGAAGATCCCGACGTCATTTTGCTGGGCGAGCTGCGCGACGTGGAAACTATTCGTTTGGCCTTAACGG
CAGCGGAGACCGGGCATCTGGTGTTGGCAACCTTACATACGCGAGGGGCGGCGCAGGCCATCGCGCGGCTGGTGGACACC
TTTCCCGCTCAGGAGAAAGATCCGGTGCGTAACCAGCTGGCAGACAGCCTGCGGGCGGTACTTTCGCAAAAGCTGGAGGA
AGATAAGCAGGGAGGACGCGTGGCGCTATTCGAACTGCTCGTCAACACTCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGTGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTCAGCAGCAGCGC
CAGGCGCAGGGGCGACTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(56-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Neisseria meningitidis 8013

46.646

100

0.469
  pilT Neisseria gonorrhoeae MS11

46.341

100

0.466
  pilT Legionella pneumophila strain ERS1305867

47.484

97.546

0.463
  pilT Legionella pneumophila strain Lp02

47.484

97.546

0.463
  pilT Acinetobacter baylyi ADP1

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

45.872

100

0.46
  pilT Pseudomonas stutzeri DSM 10701

45.872

100

0.46
  pilT Acinetobacter baumannii D1279779

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.271

97.239

0.411
  pilU Pseudomonas stutzeri DSM 10701

38.788

100

0.393
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362