Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HV084_RS19920 Genome accession   NZ_CP056834
Coordinates   4124104..4125084 (-) Length   326 a.a.
NCBI ID   WP_094168638.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-00127     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119104..4130084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV084_RS19890 (HV084_19910) - 4119885..4120382 (+) 498 WP_016157438.1 SprT family zinc-dependent metalloprotease -
  HV084_RS19895 (HV084_19915) endA 4120477..4121184 (+) 708 WP_047357836.1 deoxyribonuclease I -
  HV084_RS19900 (HV084_19920) rsmE 4121260..4121991 (+) 732 WP_016154393.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HV084_RS19905 (HV084_19925) gshB 4122004..4122951 (+) 948 WP_016154394.1 glutathione synthase -
  HV084_RS19910 (HV084_19930) - 4123128..4123691 (+) 564 WP_016154395.1 YqgE/AlgH family protein -
  HV084_RS19915 (HV084_19935) ruvX 4123691..4124107 (+) 417 WP_094168637.1 Holliday junction resolvase RuvX -
  HV084_RS19920 (HV084_19940) pilT 4124104..4125084 (-) 981 WP_094168638.1 type IV pilus twitching motility protein PilT Machinery gene
  HV084_RS19925 (HV084_19945) - 4125102..4125806 (+) 705 WP_094168639.1 YggS family pyridoxal phosphate-dependent enzyme -
  HV084_RS19930 (HV084_19950) - 4125825..4126391 (+) 567 WP_016154401.1 YggT family protein -
  HV084_RS19935 (HV084_19955) yggU 4126388..4126678 (+) 291 WP_094168640.1 DUF167 family protein YggU -
  HV084_RS19940 (HV084_19960) - 4126686..4127279 (+) 594 WP_019077664.1 XTP/dITP diphosphatase -
  HV084_RS19945 (HV084_19965) hemW 4127272..4128408 (+) 1137 WP_019077663.1 radical SAM family heme chaperone HemW -
  HV084_RS19950 (HV084_19970) - 4128722..4129708 (+) 987 WP_047357840.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35896.96 Da        Isoelectric Point: 6.1727

>NTDB_id=460781 HV084_RS19920 WP_094168638.1 4124104..4125084(-) (pilT) [Citrobacter sp. RHBSTW-00127]
MNMEEIVALSVKHNVSDLHLCNAWPARWRIGGKVEIAPFTPPDVENLLMCWLSEQQQVQWREQGQIDFALTLADSRRLRA
SAFAHQQGTSLALRLLPLECPRLDDLQTPEAIPELLHGENGLVLVTGATGSGKSTTLAAMVEYLNQHVAGHILTLEDPIE
YRYTSQRCLIQQREVGVHCASFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDT
FPAQEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSQQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=460781 HV084_RS19920 WP_094168638.1 4124104..4125084(-) (pilT) [Citrobacter sp. RHBSTW-00127]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
CTGGCGCATAGGTGGAAAAGTCGAAATAGCACCATTTACTCCCCCTGACGTGGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTGGCGGGAACAGGGGCAGATTGATTTTGCCCTTACGCTGGCGGACTCCCGGCGTCTACGCGCC
AGCGCATTTGCTCATCAACAGGGAACCTCGCTGGCGCTAAGATTGCTACCGCTTGAATGTCCTCGTTTAGACGATCTCCA
GACCCCGGAGGCCATACCTGAACTGCTGCACGGTGAAAATGGATTAGTTCTGGTCACTGGAGCCACCGGCAGCGGTAAAT
CAACCACCCTGGCGGCGATGGTGGAGTACCTTAATCAACATGTTGCGGGGCATATTCTGACTCTGGAAGATCCGATTGAA
TATCGCTACACCAGCCAGCGTTGTCTTATTCAACAGCGGGAGGTGGGCGTACACTGCGCTTCTTTTGCTGCCGGTTTGCG
CGGCGCGTTACGCGAAGATCCCGACGTCATTTTGCTGGGCGAGCTGCGCGACGTGGAAACTATTCGTTTGGCCTTAACGG
CAGCGGAGACCGGGCATCTGGTGTTGGCAACCTTACATACGCGAGGGGCGGCGCAGGCCATCGCGCGGCTGGTGGACACC
TTTCCCGCTCAGGAGAAAGATCCGGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTACTTTCGCAAAAGTTGGAGGA
AGATAAGCAGGGAGGACGCGTGGCGTTATTCGAACTGCTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGTGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTCAGCAGCAGCGC
CAGGCGCAGGGGCGACTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(59-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Neisseria meningitidis 8013

46.341

100

0.466
  pilT Neisseria gonorrhoeae MS11

46.037

100

0.463
  pilT Legionella pneumophila strain ERS1305867

47.484

97.546

0.463
  pilT Legionella pneumophila strain Lp02

47.484

97.546

0.463
  pilT Acinetobacter baylyi ADP1

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

45.872

100

0.46
  pilT Pseudomonas stutzeri DSM 10701

45.872

100

0.46
  pilT Acinetobacter baumannii D1279779

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.271

97.239

0.411
  pilU Pseudomonas stutzeri DSM 10701

38.788

100

0.393
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.728

99.387

0.365