Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6J12_RS04330 Genome accession   NZ_CP068060
Coordinates   907209..908279 (+) Length   356 a.a.
NCBI ID   WP_003034462.1    Uniprot ID   I0SIV4
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902209..913279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS04310 (I6J12_04310) - 903842..904540 (+) 699 WP_020999608.1 GntR family transcriptional regulator -
  I6J12_RS04315 (I6J12_04315) - 904656..904988 (+) 333 WP_003034487.1 putative DNA-binding protein -
  I6J12_RS04320 (I6J12_04320) ffh 905061..906611 (+) 1551 WP_003034502.1 signal recognition particle protein -
  I6J12_RS11285 - 906628..906951 (+) 324 WP_041791133.1 hypothetical protein -
  I6J12_RS04330 (I6J12_04330) xerS 907209..908279 (+) 1071 WP_003034462.1 tyrosine recombinase XerS Machinery gene
  I6J12_RS04335 (I6J12_04335) ucpA 908341..909138 (-) 798 WP_003034446.1 SDR family oxidoreductase UcpA -
  I6J12_RS04340 (I6J12_04340) - 909490..910479 (-) 990 WP_003034477.1 lipoate--protein ligase -
  I6J12_RS04345 (I6J12_04345) lpdA 910488..912194 (-) 1707 WP_003034522.1 dihydrolipoyl dehydrogenase -
  I6J12_RS04350 (I6J12_04350) - 912226..913269 (-) 1044 WP_003033188.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41289.35 Da        Isoelectric Point: 9.3193

>NTDB_id=458799 I6J12_RS04330 WP_003034462.1 907209..908279(+) (xerS) [Streptococcus anginosus strain FDAARGOS_1155]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIADGAQIAEIPLSVLENMTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFEKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=458799 I6J12_RS04330 WP_003034462.1 907209..908279(+) (xerS) [Streptococcus anginosus strain FDAARGOS_1155]
ATGAAACGCGAAATATTGTTAGAAAGAATTGAAAAACTAAAGGCTATCATGCCTTGGTACGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGACCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGCTGATGGGGCGCAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTGAATGCCAATACTACACAGAACGGGGTATCGCAAACCACCATTAA
TCGCACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGGGAGCCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAAACTTTAGCTGCGCGCGCTGAAAACATCAAACAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGAAAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCATCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTCAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTATCTGGAGGTTCGCTCTAAACGTTACAAAGCTGAAAAATC
AGACACTGCCCTCTTTTTGACGGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATGCCAGTACTCAAGTTACAGACCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAACTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(187-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SIV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

88.483

100

0.885