Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C663_RS17960 Genome accession   NC_020244
Coordinates   3609878..3611011 (-) Length   377 a.a.
NCBI ID   WP_015384884.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3604878..3616011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS17925 (C663_3557) ywnA 3605004..3605405 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  C663_RS17930 (C663_3558) ureC 3605540..3607249 (-) 1710 WP_015384878.1 urease subunit alpha -
  C663_RS17935 (C663_3559) ureB 3607246..3607620 (-) 375 WP_015384879.1 urease subunit beta -
  C663_RS17940 (C663_3560) ureA 3607617..3607934 (-) 318 WP_015483811.1 urease subunit gamma -
  C663_RS21615 (C663_3561) - 3608093..3608289 (-) 197 Protein_3617 hypothetical protein -
  C663_RS21935 - 3608391..3608459 (-) 69 WP_144486809.1 hypothetical protein -
  C663_RS21940 - 3608612..3608759 (-) 148 Protein_3619 urea ABC transporter substrate-binding protein -
  C663_RS17950 (C663_3563) csbD 3608982..3609170 (-) 189 WP_003227718.1 stress response protein CsbD -
  C663_RS17955 (C663_3564) - 3609243..3609722 (-) 480 WP_015483813.1 hypothetical protein -
  C663_RS17960 (C663_3565) rapC 3609878..3611011 (-) 1134 WP_015384884.1 response regulator aspartate phosphatase RapB Regulator
  C663_RS17965 (C663_3566) moaA 3611204..3612229 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  C663_RS17970 (C663_3567) fdhD 3612245..3613033 (-) 789 WP_015384886.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C663_RS21085 (C663_3568) - 3613279..3613440 (-) 162 WP_003227706.1 hypothetical protein -
  C663_RS17975 (C663_3569) ywmD 3613535..3614209 (-) 675 WP_003243553.1 VWA domain-containing protein -
  C663_RS21440 (C663_3571) - 3614262..3614402 (-) 141 WP_015384887.1 hypothetical protein -
  C663_RS17985 (C663_3572) ywmC 3614533..3615216 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44940.07 Da        Isoelectric Point: 4.7494

>NTDB_id=45836 C663_RS17960 WP_015384884.1 3609878..3611011(-) (rapC) [Bacillus subtilis XF-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKANDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AESFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALFVESVNLDMIQE
VFNYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=45836 C663_RS17960 WP_015384884.1 3609878..3611011(-) (rapC) [Bacillus subtilis XF-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTAATGATTTTTACAGAGTCAGAAGAATTCAATGTCATTTTGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGGCAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATCCTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCTTTATTTGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTAATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-306)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.105

100

0.424
  rapF Bacillus subtilis subsp. subtilis str. 168

41.6

99.469

0.414

Multiple sequence alignment