Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HV060_RS04030 Genome accession   NZ_CP055588
Coordinates   817412..818392 (+) Length   326 a.a.
NCBI ID   WP_003027090.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00084     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 812412..823392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV060_RS04000 (HV060_04000) ansB 812926..813972 (+) 1047 WP_181212956.1 L-asparaginase 2 -
  HV060_RS04005 (HV060_04005) hemW 814088..815224 (-) 1137 WP_046670298.1 radical SAM family heme chaperone HemW -
  HV060_RS04010 (HV060_04010) - 815217..815810 (-) 594 WP_046670300.1 XTP/dITP diphosphatase -
  HV060_RS04015 (HV060_04015) yggU 815818..816108 (-) 291 WP_003027101.1 DUF167 family protein YggU -
  HV060_RS04020 (HV060_04020) - 816105..816671 (-) 567 WP_003027097.1 YggT family protein -
  HV060_RS04025 (HV060_04025) - 816690..817394 (-) 705 WP_003838215.1 YggS family pyridoxal phosphate-dependent enzyme -
  HV060_RS04030 (HV060_04030) pilT 817412..818392 (+) 981 WP_003027090.1 type IV pilus twitching motility protein PilT Machinery gene
  HV060_RS04035 (HV060_04035) ruvX 818389..818805 (-) 417 WP_003027087.1 Holliday junction resolvase RuvX -
  HV060_RS04040 (HV060_04040) - 818805..819368 (-) 564 WP_181212957.1 YqgE/AlgH family protein -
  HV060_RS04045 (HV060_04045) gshB 819480..820427 (-) 948 WP_046670302.1 glutathione synthase -
  HV060_RS04050 (HV060_04050) rsmE 820447..821178 (-) 732 WP_003027080.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HV060_RS04055 (HV060_04055) endA 821253..821960 (-) 708 WP_016150969.1 deoxyribonuclease I -
  HV060_RS04060 (HV060_04060) - 822055..822552 (-) 498 WP_003838223.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35892.97 Da        Isoelectric Point: 6.3638

>NTDB_id=457788 HV060_RS04030 WP_003027090.1 817412..818392(+) (pilT) [Citrobacter freundii strain RHBSTW-00084]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRHGKVESAPFTAPDVENLLMCWLSEQQQVQLQEQGQIDFAVTLTDSRRLRA
SAFVHLQGTSLALRLLPLDCPHLDDLQPPAVIPELLHSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYTSRRCLIQQREVGAHCASFATGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=457788 HV060_RS04030 WP_003027090.1 817412..818392(+) (pilT) [Citrobacter freundii strain RHBSTW-00084]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
TTGGCGCAGACATGGAAAAGTCGAAAGCGCACCGTTTACCGCGCCTGACGTAGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTTGCAGGAGCAAGGGCAGATTGATTTTGCCGTTACCCTGACGGACTCCCGGCGGCTGCGCGCC
AGCGCATTTGTCCATCTGCAGGGAACCTCGCTGGCGCTAAGACTGCTACCGCTGGATTGTCCCCATTTAGACGATCTTCA
GCCTCCCGCGGTCATACCTGAACTGCTTCACAGTGAAAACGGGTTGATTCTGGTGACAGGCGCTACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGGCACATTCTGACGCTGGAAGATCCTATTGAA
TATCGCTACACCAGCCGACGTTGTCTGATTCAACAGCGGGAGGTGGGCGCACACTGCGCCTCTTTCGCCACCGGTTTGCG
CGGTGCGCTACGCGAAGATCCCGACGTTATTTTGCTGGGTGAGCTGCGCGACGTGGAAACCATTCGGCTGGCATTAACGG
CGGCGGAAACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCACAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCAACAGAGAAAGATCCTGTGCGTAACCAACTGGCAGATAGCCTGCGGGCGGTTCTTTCGCAAAAACTGGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAACTGCTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTTTACAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(64-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain ERS1305867

45.652

98.773

0.451
  pilT Legionella pneumophila strain Lp02

45.652

98.773

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.64

97.239

0.405
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365