Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ST4145_RS04850 Genome accession   NZ_CP065492
Coordinates   930680..931750 (-) Length   356 a.a.
NCBI ID   WP_024009896.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 925680..936750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4145_RS04835 (ST4145_04770) pstB 926405..927163 (+) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -
  ST4145_RS04840 (ST4145_04775) phoU 927191..927844 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  ST4145_RS04845 (ST4145_04780) - 927978..930518 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  ST4145_RS04850 (ST4145_04785) xerS 930680..931750 (-) 1071 WP_024009896.1 tyrosine recombinase XerS Machinery gene
  ST4145_RS04855 (ST4145_04790) - 931975..932964 (-) 990 WP_024009898.1 lipoate--protein ligase -
  ST4145_RS04860 (ST4145_04795) - 933147..933701 (+) 555 WP_172642934.1 hypothetical protein -
  ST4145_RS04865 (ST4145_04800) - 933764..934186 (+) 423 WP_253269242.1 hypothetical protein -
  ST4145_RS04870 (ST4145_04805) - 934294..936558 (-) 2265 WP_024009899.1 glycogen/starch/alpha-glucan phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.61 Da        Isoelectric Point: 9.6822

>NTDB_id=448937 ST4145_RS04850 WP_024009896.1 930680..931750(-) (xerS) [Streptococcus thermophilus strain 4145]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=448937 ST4145_RS04850 WP_024009896.1 930680..931750(-) (xerS) [Streptococcus thermophilus strain 4145]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACTATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATGTGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829