NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	HQN78_RS15940	Genome accession	NZ_CP053750
Coordinates	3444178..3444615 (-)	Length	145 a.a.
NCBI ID	WP_235084839.1	Uniprot ID	-
Organism	Chromobacterium sp. Beijing
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3439178..3449615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQN78_RS15920 (HQN78_15765)	rpoH	3439524..3440387 (+)	864	WP_235084829.1	RNA polymerase sigma factor RpoH	-
HQN78_RS15925 (HQN78_15770)	-	3440460..3442244 (-)	1785	WP_235084832.1	PglL family O-oligosaccharyltransferase	-
HQN78_RS15930 (HQN78_15775)	-	3442320..3443261 (-)	942	WP_235084834.1	PglL family O-oligosaccharyltransferase	-
HQN78_RS15935 (HQN78_15780)	-	3443183..3444130 (-)	948	WP_235084837.1	pilin glycosylation ligase domain-containing protein	-
HQN78_RS15940 (HQN78_15785)	pilA	3444178..3444615 (-)	438	WP_235084839.1	pilin	Machinery gene
HQN78_RS15945 (HQN78_15790)	pilA2	3444631..3445050 (-)	420	WP_304502819.1	pilin	Machinery gene
HQN78_RS15955 (HQN78_15795)	-	3445246..3446598 (+)	1353	WP_235084841.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
HQN78_RS15960 (HQN78_15800)	-	3446701..3448203 (+)	1503	WP_235084843.1	hypothetical protein	-
HQN78_RS15965 (HQN78_15805)	proB	3448393..3449511 (+)	1119	WP_107797916.1	glutamate 5-kinase	-

Sequence

Protein

Download Length: 145 a.a. Molecular weight: 14908.90 Da Isoelectric Point: 8.4633

                                >NTDB_id=446914 HQN78_RS15940 WP_235084839.1 3444178..3444615(-) (pilA) [Chromobacterium sp. Beijing]

MQKSQQGFTLIELMIVVAIIGILAAIAIPAYQDYTKRARVSEGLSLASAAKTAVAEYYASNGSFPTSNASAGLQTTITGN

SVTDLSVGASGVLTVTYSTTLVDSTNNKLTLTPSASGGSIIWICAKASSNGVKDQWLPANCRAGN

Nucleotide

Download Length: 438 bp

                                >NTDB_id=446914 HQN78_RS15940 WP_235084839.1 3444178..3444615(-) (pilA) [Chromobacterium sp. Beijing]

ATGCAAAAATCCCAACAAGGTTTTACTCTTATCGAGCTGATGATAGTTGTTGCTATCATTGGTATTCTCGCCGCGATTGC

CATTCCCGCTTATCAGGACTACACGAAGCGGGCCAGAGTTTCTGAGGGTCTGAGTCTGGCTTCTGCTGCAAAAACTGCTG

TGGCAGAGTACTATGCTTCAAATGGCTCATTTCCGACAAGCAATGCCTCTGCTGGATTGCAAACTACTATTACGGGTAAT

TCGGTGACTGACCTTTCTGTCGGTGCTAGTGGGGTGCTTACTGTGACGTACAGTACGACACTTGTGGATTCTACTAACAA

TAAATTGACTTTGACTCCCTCTGCATCAGGAGGGTCGATTATATGGATTTGTGCGAAGGCGAGTTCCAATGGTGTTAAAG

ATCAATGGTTGCCAGCAAACTGCCGAGCTGGTAACTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Ralstonia pseudosolanacearum GMI1000	43.114	100	0.497
pilE	Neisseria gonorrhoeae MS11	43.75	100	0.483
comP	Acinetobacter baylyi ADP1	46	100	0.476
pilE	Neisseria gonorrhoeae strain FA1090	43.396	100	0.476
pilA2	Legionella pneumophila strain ERS1305867	47.482	95.862	0.455
pilA2	Legionella pneumophila str. Paris	47.482	95.862	0.455
pilA/pilA1	Eikenella corrodens VA1	41.772	100	0.455
pilA	Vibrio cholerae strain A1552	41.06	100	0.428
pilA	Vibrio cholerae C6706	41.06	100	0.428
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	41.06	100	0.428
pilA	Acinetobacter baumannii strain A118	39.456	100	0.4
pilA	Vibrio parahaemolyticus RIMD 2210633	42.969	88.276	0.379
pilA/pilAI	Pseudomonas stutzeri DSM 10701	38.028	97.931	0.372
pilA/pilAII	Pseudomonas stutzeri DSM 10701	36.986	100	0.372
pilA	Pseudomonas aeruginosa PAK	34.641	100	0.366

Detailed information NTG0446914