Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   HQN78_RS15945 Genome accession   NZ_CP053750
Coordinates   3444631..3445050 (-) Length   139 a.a.
NCBI ID   WP_304502819.1    Uniprot ID   -
Organism   Chromobacterium sp. Beijing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439631..3450050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS15925 (HQN78_15770) - 3440460..3442244 (-) 1785 WP_235084832.1 PglL family O-oligosaccharyltransferase -
  HQN78_RS15930 (HQN78_15775) - 3442320..3443261 (-) 942 WP_235084834.1 PglL family O-oligosaccharyltransferase -
  HQN78_RS15935 (HQN78_15780) - 3443183..3444130 (-) 948 WP_235084837.1 pilin glycosylation ligase domain-containing protein -
  HQN78_RS15940 (HQN78_15785) pilA 3444178..3444615 (-) 438 WP_235084839.1 pilin Machinery gene
  HQN78_RS15945 (HQN78_15790) pilA2 3444631..3445050 (-) 420 WP_304502819.1 pilin Machinery gene
  HQN78_RS15955 (HQN78_15795) - 3445246..3446598 (+) 1353 WP_235084841.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  HQN78_RS15960 (HQN78_15800) - 3446701..3448203 (+) 1503 WP_235084843.1 hypothetical protein -
  HQN78_RS15965 (HQN78_15805) proB 3448393..3449511 (+) 1119 WP_107797916.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14389.39 Da        Isoelectric Point: 5.6543

>NTDB_id=446915 HQN78_RS15945 WP_304502819.1 3444631..3445050(-) (pilA2) [Chromobacterium sp. Beijing]
MRKAAGFTLIELMIVVAIIGILAAIAIPAYQNYTIRAKVAEGLTYADQAKTSVSEFYLAGNTWPSTNASAGLPDTLAGNY
VSNVQVGVSSGVSTVTVLFNNSVVSGLSVVFTPVVSSGTIAWSCSTDAAYAQYVPSSCH

Nucleotide


Download         Length: 420 bp        

>NTDB_id=446915 HQN78_RS15945 WP_304502819.1 3444631..3445050(-) (pilA2) [Chromobacterium sp. Beijing]
ATGAGGAAGGCGGCTGGTTTTACCTTGATTGAACTAATGATTGTTGTCGCTATTATCGGTATTTTGGCGGCGATTGCGAT
TCCGGCTTATCAGAATTATACGATTCGAGCCAAGGTGGCGGAAGGTCTAACTTATGCAGATCAGGCAAAGACCTCGGTGT
CTGAATTCTATCTGGCGGGCAATACTTGGCCAAGCACCAATGCCAGTGCGGGTTTGCCTGATACTTTGGCGGGAAATTAT
GTCAGTAATGTGCAGGTTGGAGTCAGTAGCGGAGTCAGTACGGTGACTGTGCTGTTTAATAATAGTGTGGTCTCTGGTTT
GTCTGTAGTTTTTACCCCAGTAGTGAGTAGTGGTACTATAGCGTGGTCGTGCTCTACTGATGCGGCTTATGCCCAATATG
TGCCTTCGTCTTGCCATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(36-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

49.286

100

0.496
  pilA2 Legionella pneumophila strain ERS1305867

48.571

100

0.489
  comP Acinetobacter baylyi ADP1

44.966

100

0.482
  pilA Ralstonia pseudosolanacearum GMI1000

40.491

100

0.475
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.155

100

0.446
  pilE Neisseria gonorrhoeae MS11

38.71

100

0.432
  pilE Neisseria gonorrhoeae strain FA1090

37.013

100

0.41
  pilA Pseudomonas aeruginosa PAK

34.81

100

0.396
  pilA/pilA1 Eikenella corrodens VA1

37.162

100

0.396