Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | HJ571_RS26575 | Genome accession | NZ_CP053747 |
| Coordinates | 5660636..5661508 (+) | Length | 290 a.a. |
| NCBI ID | WP_034037193.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain Pae1255-NDM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5655636..5666508
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ571_RS26555 | - | 5656424..5656930 (-) | 507 | WP_225007572.1 | hypothetical protein | - |
| HJ571_RS26560 (HJ571_26565) | - | 5657019..5657483 (-) | 465 | WP_023129290.1 | pilin | - |
| HJ571_RS26565 (HJ571_26570) | pilB | 5657714..5659414 (+) | 1701 | WP_179839642.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HJ571_RS26570 (HJ571_26575) | pilC | 5659418..5660635 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| HJ571_RS26575 (HJ571_26580) | pilD | 5660636..5661508 (+) | 873 | WP_034037193.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| HJ571_RS26580 (HJ571_26585) | coaE | 5661505..5662116 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| HJ571_RS26585 (HJ571_26590) | yacG | 5662113..5662313 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| HJ571_RS26590 (HJ571_26595) | - | 5662350..5662559 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| HJ571_RS26595 (HJ571_26600) | - | 5662665..5663354 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| HJ571_RS26600 (HJ571_26605) | - | 5663351..5663821 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| HJ571_RS26605 (HJ571_26610) | - | 5663818..5664243 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| HJ571_RS26610 (HJ571_26615) | - | 5664376..5665005 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| HJ571_RS26615 (HJ571_26620) | - | 5665002..5665451 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| HJ571_RS26620 (HJ571_26625) | - | 5665477..5665647 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31783.78 Da Isoelectric Point: 7.7068
>NTDB_id=446861 HJ571_RS26575 WP_034037193.1 5660636..5661508(+) (pilD) [Pseudomonas aeruginosa strain Pae1255-NDM1]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=446861 HJ571_RS26575 WP_034037193.1 5660636..5661508(+) (pilD) [Pseudomonas aeruginosa strain Pae1255-NDM1]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.19 |
90.69 |
0.455 |