Detailed information NTG0441207

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HIN88_RS19255
• Genome accession: NZ_CP051866
• Coordinates: 3486309..3487169 (+)
• Length: 286 a.a.
• NCBI ID: WP_064191992.1
• Uniprot ID: A0A9P2L528
• Organism: Acinetobacter baumannii strain Ab-C63
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3481309..3492169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HIN88_RS16695 (HIN88_16695)	secG	3481914..3482243 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
HIN88_RS16700 (HIN88_16700)	tpiA	3482256..3483050 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
HIN88_RS16705 (HIN88_16705)	pilB	3483341..3485053 (+)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HIN88_RS16710 (HIN88_16710)	pilC	3485083..3486309 (+)	1227	WP_004842682.1	type II secretion system F family protein	Machinery gene
HIN88_RS19255 (HIN88_16715)	pilD	3486309..3487169 (+)	861	WP_064191992.1	prepilin peptidase	Machinery gene
HIN88_RS16720 (HIN88_16720)	coaE	3487171..3487767 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
HIN88_RS16725 (HIN88_16725)	-	3487764..3488678 (-)	915	WP_064191991.1	DMT family transporter	-
HIN88_RS16730 (HIN88_16730)	rlmB	3488714..3489463 (-)	750	WP_033853488.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HIN88_RS16735 (HIN88_16735)	-	3489565..3489891 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
HIN88_RS16740 (HIN88_16740)	-	3489968..3491278 (-)	1311	WP_000753287.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32098.51 Da
• Isoelectric Point: 7.1041

>NTDB_id=441207 HIN88_RS19255 WP_064191992.1 3486309..3487169(+) (pilD) [Acinetobacter baumannii strain Ab-C63]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=441207 HIN88_RS19255 WP_064191992.1 3486309..3487169(+) (pilD) [Acinetobacter baumannii strain Ab-C63]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCTCTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.951	100	0.99
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.106	92.308	0.444