Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HG566_RS00210 | Genome accession | NZ_CP051501 |
| Coordinates | 35239..36375 (+) | Length | 378 a.a. |
| NCBI ID | WP_202164571.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-002 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30239..41375
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG566_RS00175 (HG566_00175) | panD | 30673..31023 (+) | 351 | WP_202164567.1 | aspartate 1-decarboxylase | - |
| HG566_RS00180 (HG566_00180) | - | 31034..31327 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HG566_RS00185 (HG566_00185) | - | 31327..32337 (+) | 1011 | WP_202165270.1 | PDZ domain-containing protein | - |
| HG566_RS00190 (HG566_00190) | comB6 | 32345..33400 (+) | 1056 | WP_202165268.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HG566_RS00195 (HG566_00195) | comB7 | 33416..33541 (+) | 126 | WP_202164568.1 | comB7 lipoprotein | Machinery gene |
| HG566_RS00200 (HG566_00200) | comB8 | 33538..34281 (+) | 744 | WP_202164569.1 | virB8 family protein | Machinery gene |
| HG566_RS00205 (HG566_00205) | comB9 | 34281..35246 (+) | 966 | WP_202164570.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HG566_RS00210 (HG566_00210) | comB10 | 35239..36375 (+) | 1137 | WP_202164571.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HG566_RS00215 (HG566_00215) | - | 36445..37857 (+) | 1413 | WP_202164572.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HG566_RS00220 (HG566_00220) | gmd | 37872..39017 (+) | 1146 | WP_202164573.1 | GDP-mannose 4,6-dehydratase | - |
| HG566_RS00225 (HG566_00225) | - | 39010..39942 (+) | 933 | WP_202164574.1 | GDP-L-fucose synthase | - |
| HG566_RS00230 (HG566_00230) | hypE | 40214..41212 (-) | 999 | WP_202164576.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42128.74 Da Isoelectric Point: 9.9143
>NTDB_id=439200 HG566_RS00210 WP_202164571.1 35239..36375(+) (comB10) [Helicobacter pylori strain PUNO-002]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPSKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPSKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=439200 HG566_RS00210 WP_202164571.1 35239..36375(+) (comB10) [Helicobacter pylori strain PUNO-002]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACAATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAAC
AAACACAACCCCCTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAACTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACAATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAAC
AAACACAACCCCCTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAACTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.767 |
100 |
0.958 |