NTDB

Overview

Name	pilA/pilAI	Type	Machinery gene
Locus tag	HEP75_RS05390	Genome accession	NZ_CP051261
Coordinates	1266576..1266980 (+)	Length	134 a.a.
NCBI ID	WP_185825703.1	Uniprot ID	-
Organism	Xanthomonas sp. SI
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1261576..1271980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HEP75_RS05370 (HEP75_01053)	-	1261842..1263182 (+)	1341	WP_185825700.1	HAMP domain-containing sensor histidine kinase	-
HEP75_RS05375 (HEP75_01054)	coaE	1263430..1264050 (-)	621	WP_185825701.1	dephospho-CoA kinase	-
HEP75_RS05380 (HEP75_01055)	-	1264064..1264927 (-)	864	WP_046978035.1	A24 family peptidase	-
HEP75_RS05385 (HEP75_01056)	pilC	1264934..1266193 (-)	1260	WP_185825702.1	type II secretion system F family protein	Machinery gene
HEP75_RS05390 (HEP75_01057)	pilA/pilAI	1266576..1266980 (+)	405	WP_185825703.1	pilin	Machinery gene
HEP75_RS22395	-	1267063..1267485 (+)	423	WP_185825704.1	pilin	-
HEP75_RS05400 (HEP75_01058)	-	1267529..1269433 (+)	1905	WP_185825705.1	hypothetical protein	-
HEP75_RS05405 (HEP75_01059)	-	1269524..1270684 (+)	1161	WP_185825706.1	DegT/DnrJ/EryC1/StrS family aminotransferase	-
HEP75_RS05410 (HEP75_01060)	-	1270671..1271882 (-)	1212	WP_221899305.1	hypothetical protein	-

Sequence

Protein

Download Length: 134 a.a. Molecular weight: 13868.82 Da Isoelectric Point: 8.8698

                                >NTDB_id=437130 HEP75_RS05390 WP_185825703.1 1266576..1266980(+) (pilA/pilAI) [Xanthomonas sp. SI]

MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVRKSQVTAALSDITPGKTQFEVKINEGSGFGTTGSAVGLQNTTSRCS

AITVSPSDTGNITCTMIGGAGVGGTTIAWTRNASGNWTCSTTADAKYRPSTCAQ

Nucleotide

Download Length: 405 bp

                                >NTDB_id=437130 HEP75_RS05390 WP_185825703.1 1266576..1266980(+) (pilA/pilAI) [Xanthomonas sp. SI]

ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT

GCCGGCCTACCAGAACTACGTGCGCAAGTCGCAGGTCACCGCGGCCCTGTCCGACATCACCCCGGGCAAGACGCAGTTCG

AAGTCAAGATCAACGAAGGCAGCGGTTTTGGCACCACGGGCAGCGCCGTTGGTCTGCAGAACACCACCAGCCGTTGTTCC

GCGATCACTGTCAGCCCGAGCGACACCGGCAACATCACCTGCACCATGATTGGTGGCGCCGGTGTGGGCGGCACCACGAT

TGCCTGGACGCGTAACGCTTCCGGCAACTGGACCTGTTCCACCACTGCGGATGCTAAGTACCGTCCCAGCACCTGCGCGC

AGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-132)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA/pilAI	Pseudomonas stutzeri DSM 10701	53.333	100	0.537
pilA	Pseudomonas aeruginosa PAK	42	100	0.47
pilA/pilAII	Pseudomonas stutzeri DSM 10701	45.865	99.254	0.455
pilA	Acinetobacter baumannii strain A118	43.796	100	0.448
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	32.787	100	0.448
pilA/pilA1	Eikenella corrodens VA1	40	100	0.448
pilA	Vibrio cholerae strain A1552	42.857	100	0.448
pilA	Vibrio cholerae C6706	42.857	100	0.448
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	42.857	100	0.448
comP	Acinetobacter baylyi ADP1	40.69	100	0.44
pilA2	Legionella pneumophila strain ERS1305867	40.278	100	0.433
pilE	Neisseria gonorrhoeae MS11	36.129	100	0.418
pilA	Ralstonia pseudosolanacearum GMI1000	33.537	100	0.41
pilA2	Legionella pneumophila str. Paris	39.85	99.254	0.396
pilA	Vibrio parahaemolyticus RIMD 2210633	40.31	96.269	0.388

Detailed information NTG0437130